CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0520400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os08g0520400 AK064309.1 - Conserved hypothetical protein 2e+0 At5g23940 EMB3009 (embryo defective 3009) S.X. H.G.
0.77 93.1 Os08g0166500 AK103907.1 - Hypothetical protein 5e-2 At3g09735 DNA-binding S1FA family protein S.X. H.G.
0.73 91.1 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein S.X. H.G.
0.67 87.2 Os12g0624800 AK103828.1 - Hypothetical protein 1e+0 At4g04630 unknown protein S.X. H.G.
0.59 78.0 Os02g0772300 AK071492.1 - GCN5-related N-acetyltransferase domain containingprotein 3e+0 At5g49540 unknown protein S.X. H.G.
0.57 77.0 Os04g0528400 AK101159.1 - Hus1-like protein family protein 2e-8 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.8 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.4 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-3 46 Os02g0551700 AK106428.1 - Protein of unknown function DUF668 family protein 8e-1 At1g34320 unknown protein C.G. S.X.
0.01 3e-3 46 Os09g0416200 AK065807.1 - H(+)/hexose cotransporter 1e-6 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.01 1e-2 44 Os08g0510900 AK069250.1 - Conserved hypothetical protein 2e-1 At1g17300 unknown protein C.G. S.X.
0.01 1e-2 44 Os09g0446900 9637.m02407 - - 4e+0 At5g62998 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO - - - C.G. S.X.
0.01 6e-1 38 Glycine max GmaAffx.63645.1.S1_at BG509439 - - 5e-2 At4g09490 RNase H domain-containing protein C.G. S.X.
0.17 8e-38 159 Hordeum vulgare HF02K06r_at HF02K06r - - 2e-2 At5g04610 spermidine synthase-related / putrescine aminopropyltransferase-related C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.202924.1.S1_at pmrna5786 hypothetical protein - 2e+0 At3g10880 unknown protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.8614.1.S1_at CA622773 - - 1e+0 At5g58412 - C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1617079_at CB972040 - - 4e-1 At3g26900 shikimate kinase family protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.9767.1.A1_at BM340742 - - 3e-1 At1g77122 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage