CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0505900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os08g0505900 AK060670.1 - DNA-damage-repair/toleration protein DRT100precursor 1e-2 At5g12940 leucine-rich repeat family protein S.X. H.G.
0.80 94.6 Os07g0564200 AK072771.1 - Conserved hypothetical protein 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) S.X. H.G.
0.77 93.1 Os04g0137100 AK060609.1 - Pectate lyase (Fragment) 8e-6 At3g07010 pectate lyase family protein S.X. H.G.
0.61 81.2 Os01g0315700 AK112057.1 - Hypothetical protein 3e-12 At3g62860 esterase/lipase/thioesterase family protein S.X. H.G.
0.46 60.9 Os11g0463700 AK065785.1 - Conserved hypothetical protein 4e-1 At5g14000 anac084 (Arabidopsis NAC domain containing protein 84) S.X. H.G.
0.44 58.1 Os09g0461500 AK102328.1 - Esterase/lipase/thioesterase domain containingprotein 2e-4 At5g23530 AtCXE18 (Arabidopsis thaliana carboxyesterase 18) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.8 99.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
33.7 99.8 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
33.0 99.8 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.3 98.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
14.9 98.6 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
14.9 98.6 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.6 98.1 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
10.3 98.1 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
10.3 98.1 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
9.1 97.9 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 52 Os05g0169600 9633.m00690 - Protein kinase domain containing protein 4e-4 At4g04510 protein kinase family protein C.G. S.X.
0.04 7e-6 54 Os12g0632900 AK071957.1 - Receptor protein kinase 3e-5 At5g49660 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 2e-6 56 Os09g0423200 9637.m02208 - Protein kinase domain containing protein 3e-2 At3g19700 IKU2 (HAIKU2) C.G. S.X.
0.03 7e-6 54 Os06g0557100 AK119892.1 - Protein kinase domain containing protein 4e-1 At5g47850 CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4) C.G. S.X.
0.03 7e-6 54 Os06g0589800 AK101039.1 - - 2e-6 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 7e-6 54 Os06g0627500 AK101725.1 - Leucine-rich repeat, plant specific containingprotein 7e-1 At5g10620 - C.G. S.X.
0.03 1e-4 50 Os10g0114400 9638.m00154 - Protein kinase domain containing protein 5e-10 At2g01950 BRL2 (BRI1-LIKE 2) C.G. S.X.
0.01 3e-5 52 Os01g0870500 AK065439.1 - Protein kinase domain containing protein 1e+0 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.01 3e-5 52 Os01g0889900 AK099945.1 - S-locus glycoprotein family protein 1e-3 At1g34300 lectin protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Arabidopsis thaliana At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA - - - C.G. S.X.
0.07 1e-9 65 Glycine max Gma.2030.1.S1_at CD418266 - - 6e-11 At3g20820 leucine-rich repeat family protein C.G. S.X.
0.03 4e-1 36 Hordeum vulgare Contig20770_at Contig20770 - - 6e+0 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.69509.1.A1_at CV254759 - - 3e+0 At5g57565 protein kinase family protein C.G. S.X.
0.04 1e-2 42 Triticum aestivum TaAffx.107888.1.S1_at CA664115 - - 2e+0 At1g55990 glycine-rich protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1610756_at CF604824 hypothetical protein LOC100241571 - 3e-24 At3g20820 leucine-rich repeat family protein C.G. S.X.
0.02 9e-2 38 Zea mays Zm.10101.1.A1_at BM379606 - - 4e+0 At3g60940 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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