CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0503700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os08g0503700 AK072183.1 - - 1e-9 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) S.X. H.G.
0.40 51.1 Os11g0444800 AK061328.1 - Hypothetical protein 6e-7 At3g48240 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein S.X. H.G.
0.16 11.3 Os05g0110800 AK067749.1 - Conserved hypothetical protein 2e-3 At5g59400 unknown protein S.X. H.G.
0.08 4.2 Os09g0464000 AK060777.1 - Carbonic anhydrase, prokaryotic and plant domaincontaining protein 2e-1 At1g24822 unknown protein S.X. H.G.
0.07 3.7 Os09g0478100 AK103810.1 - Cellulose synthase family protein 7e-2 At1g55850 ATCSLE1 S.X. H.G.
0.06 3.0 Os11g0118300 AK064985.1 - NPH3 domain containing protein 7e-2 At5g42750 BKI1 (BRI1 kinase inhibitor 1) S.X. H.G.
0.06 3.0 Os02g0818000 AK065134.1 - - 4e+0 At4g20970 basic helix-loop-helix (bHLH) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.1 98.5 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
12.6 98.4 GSM159266 Salt stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
12.2 98.3 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.8 98.0 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.3 97.7 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.1 97.7 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.1 97.7 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
7.3 97.5 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
7.3 97.5 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
7.3 97.5 GSM254092 Rice overexpressed OsSKIPa, biological repeat 2 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 5e-97 357 Os09g0484900 AK067836.1 - Sodium-dicarboxylate cotransporter-like 1e-18 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.41 0 1957 Os08g0503600 AK119300.1 - Conserved hypothetical protein 2e-9 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.02 6e-4 48 Os08g0512100 9636.m04059 - - 6e+0 At4g16240 unknown protein C.G. S.X.
0.01 6e-4 48 Os02g0679500 AY364311.1 - Rac GTPase activating protein 2 (Fragment) 2e-16 At2g46710 rac GTPase activating protein, putative C.G. S.X.
0.01 2e-3 46 Os07g0122800 9635.m00218 - - 1e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e-3 46 Os09g0314500 9637.m01163 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 5e-1 At5g44570 unknown protein C.G. S.X.
0.01 2e-3 46 Os09g0493000 AK107737.1 - Conserved hypothetical protein 2e+0 At3g44950 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-9 65 Arabidopsis thaliana At5g47560 834806 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) Encodes a tonoplast malate/fumarate transporter. - - - C.G. S.X.
0.06 4e-7 57 Glycine max GmaAffx.15342.1.S1_at AI442425 - - 2e-9 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.31 8e-111 400 Hordeum vulgare Contig17624_at Contig17624 - - 7e-5 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.02 2e+0 36 Populus trichocarpa PtpAffx.214714.1.S1_at pmrna28538 hypothetical protein - 2e-1 At4g36020 CSDP1 (cold shock domain protein 1) C.G. S.X.
0.24 4e-56 220 Triticum aestivum Ta.27259.1.S1_at CA627613 - - 6e-1 At1g21320 nucleic acid binding / nucleotide binding C.G. S.X.
0.02 2e-8 59 Vitis vinifera 1614820_at CF404616 hypothetical protein LOC100255398 - 6e-13 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.40 2e-92 339 Zea mays Zm.13609.1.S1_at AY107570.1 - - 2e+1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006814 The directed movement of sodium ions (Na+) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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