CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0496000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0496000 AK103187.1 - Cytochrome oxidase assembly family protein 1e-12 At5g56090 COX15 (cytochrome c oxidase 15) S.X. H.G.
0.55 73.7 Os08g0313200 AK121969.1 - CBS domain containing protein 1e-5 At4g36910 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) S.X. H.G.
0.53 71.3 Os02g0725200 AK103602.1 - Nuclear protein SET domain containing protein 3e-25 At3g07670 SET domain-containing protein S.X. H.G.
0.52 69.6 Os03g0314700 AK069184.1 - Nitrogen-fixing NifU, C-terminal domain containingprotein 2e+0 At4g19100 unknown protein S.X. H.G.
0.47 62.3 Os03g0579000 AK072995.1 - Peptidase M50 family protein 8e-1 At1g05140 membrane-associated zinc metalloprotease, putative S.X. H.G.
0.45 58.8 Os05g0571400 AK062369.1 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein S.X. H.G.
0.42 53.9 Os01g0895100 AK067698.1 - Membrane-associated 30 kDa protein, chloroplastprecursor (M30) 4e-27 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) S.X. H.G.
0.41 52.4 Os01g0151200 AK110801.1 - Inner membrane protein ALBINO3, chloroplastprecursor. Splice isoform 2 1e-37 At2g28800 ALB3 (ALBINO 3) S.X. H.G.
0.40 51.1 Os04g0431100 AK101973.1 - GrpE protein family protein 2e-1 At3g05290 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) S.X. H.G.
0.34 40.0 Os01g0965400 AK104789.1 - Uridylate kinase (EC 2.7.4.-) (UK) (Uridinemonophosphate kinase) (UMP kinase) 5e-48 At3g18680 aspartate/glutamate/uridylate kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 98.0 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.8 98.0 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
9.6 97.9 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
9.5 97.9 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
8.8 97.8 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
8.3 97.7 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.1 97.4 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
6.8 97.3 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.7 97.3 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.1 97.1 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-22 109 Os01g0824000 AK108946.1 - Conserved hypothetical protein 8e-1 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.03 4e-2 40 Os06g0639100 AK102470.1 - Zn-finger, RING domain containing protein 2e+0 At1g02710 glycine-rich protein C.G. S.X.
0.03 4e-2 40 Os07g0646100 NM_185900.1 - Protein phosphatase 2C family protein 1e-1 At4g38520 protein phosphatase 2C family protein / PP2C family protein C.G. S.X.
0.02 7e-4 46 Os10g0329700 BM038198 - Serine/threonine protein kinase family protein 3e-1 At1g29720 protein kinase family protein C.G. S.X.
0.02 4e-2 40 Os07g0200700 AK063341.1 - Squalene synthase 2e-23 At4g34640 SQS1 (SQUALENE SYNTHASE 1) C.G. S.X.
0.01 8e-3 44 Os01g0789200 AK070450.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 2e-1 At3g07070 protein kinase family protein C.G. S.X.
0.01 8e-3 44 Os03g0203000 AK065462.1 - Hypothetical protein 7e-1 At3g56090 ATFER3 (ferritin 3) C.G. S.X.
0.01 8e-3 44 Os06g0224100 AK061083.1 - Conserved hypothetical protein 2e+0 At4g14910 imidazoleglycerol-phosphate dehydratase, putative C.G. S.X.
0.01 3e-2 42 Os02g0220800 AK111379.1 - Conserved hypothetical protein 3e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.01 3e-2 42 Os02g0819900 9630.m05720 - Protein kinase domain containing protein 6e-1 At3g50870 MNP (MONOPOLE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-10 67 Arabidopsis thaliana At5g56090 835708 COX15 (cytochrome c oxidase 15) Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. - - - C.G. S.X.
0.06 3e-5 52 Glycine max GmaAffx.65523.1.S1_at CA782549 - - 3e-3 At5g56090 COX15 (cytochrome c oxidase 15) C.G. S.X.
0.11 2e-62 240 Hordeum vulgare Contig23267_at Contig23267 - - 5e+0 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.07 3e-11 71 Populus trichocarpa PtpAffx.201486.1.S1_at pmrna2921 hypothetical protein - 8e-68 At5g56090 COX15 (cytochrome c oxidase 15) C.G. S.X.
0.14 2e-73 278 Triticum aestivum Ta.5421.1.A1_at BJ282730 - - 1e+0 At2g19310 - C.G. S.X.
0.04 5e-19 95 Vitis vinifera 1618302_at CF512969 hypothetical protein LOC100251414 - 7e-53 At5g56090 COX15 (cytochrome c oxidase 15) C.G. S.X.
0.47 6e-118 424 Zea mays Zm.13434.1.A1_at AW562937 hypothetical protein LOC100192499 - 4e-12 At5g56090 COX15 (cytochrome c oxidase 15) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006123 The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
S GO:0009060 The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
L GO:0006461 The aggregation, arrangement and bonding together of a set of components to form a protein complex.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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