CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0495800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os08g0495800 AK067229.1 - Raffinose synthase family protein 3e-26 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) S.X. H.G.
0.44 58.1 Os11g0152900 AK109321.1 - Hypothetical protein 1e-1 At1g71100 RSW10 (RADIAL SWELLING 10) S.X. H.G.
0.29 31.1 Os08g0357300 AK100580.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 8e-8 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) S.X. H.G.
0.11 6.5 Os12g0611100 AK066826.1 - SRKb 2e-5 At1g16670 protein kinase family protein S.X. H.G.
0.10 5.7 Os04g0687900 AK062547.1 - Tubby family protein 1e-6 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) S.X. H.G.
0.05 2.5 Os06g0168500 AK100316.1 - Syntaxin-like protein (Fragment) 3e-6 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.2 99.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
27.5 99.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
20.7 99.2 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
15.3 98.7 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
13.9 98.5 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.7 98.5 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
13.5 98.5 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.7 98.4 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
9.8 98.0 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
9.7 98.0 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 8e-127 456 Os11g0435500 AK069963.1 - Conserved hypothetical protein 1e-9 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) C.G. S.X.
0.07 2e-10 69 Os07g0209100 AK120944.1 - Raffinose synthase family protein 6e-6 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) C.G. S.X.
0.06 1e-5 54 Os03g0808900 AK065100.1 - Seed imbibition protein 6e-9 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) C.G. S.X.
0.01 3e-3 46 Os01g0133400 NM_184261.1 - Hexose transporter (Fragment) 5e-12 At5g16150 PGLCT (PLASTIDIC GLC TRANSLOCATOR) C.G. S.X.
0.01 3e-3 46 Os06g0130000 AK064427.1 - Tobacco mosaic virus helicase domain-bindingprotein (Fragment) 3e-27 At2g45500 ATP binding / nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-26 121 Arabidopsis thaliana At1g55740 842023 AtSIP1 (Arabidopsis thaliana seed imbibition 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO - - - C.G. S.X.
0.17 9e-21 103 Glycine max Gma.12012.1.S1_s_at BU548282 - - 1e-14 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) C.G. S.X.
0.47 2e-155 549 Hordeum vulgare Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) C.G. S.X.
0.31 5e-38 161 Populus trichocarpa PtpAffx.216301.1.S1_s_at pmrna30987 hypothetical protein - 3e-35 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) C.G. S.X.
0.21 1e-59 232 Triticum aestivum Ta.26092.1.S1_at CD452594 - - 1e+0 At1g49405 integral membrane protein, putative C.G. S.X.
0.08 5e-16 85 Vitis vinifera 1608995_at BQ796616 hypothetical protein LOC100248608 - 2e-92 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) C.G. S.X.
0.18 2e-34 147 Zea mays Zm.19172.1.A1_at CO528850 hypothetical protein LOC100274312 - 7e-3 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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