Gene omics information

Query gene ID	Os08g0479300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	78.0	Os08g0479300	AK070025.1	-	Cyclin, N-terminal domain containing protein	9e-1	At1g66940	protein kinase-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.84	96.0	Os03g0114000	AK063381.1	-	Kinesin-related protein (Fragment)	7e-48	At2g22610	kinesin motor protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.70	88.4	Os05g0459400	AK073413.1	-	Kinesin, motor region domain containing protein	4e+0	At5g37415	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os06g0256100	AK119768.1	-	Hypothetical protein	3e+0	At5g04600	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.64	83.4	Os05g0409400	AK102597.1	-	MAP65/ASE1 family protein	7e-5	At2g38720	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os08g0129600	AK102166.1	-	Conserved hypothetical protein	6e-3	At4g18570	proline-rich family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os05g0497100	AK064293.1	-	Chromosome condensation protein	7e-62	At5g48600	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os10g0104900	AK112062.1	-	Chromomethylase 3	1e-5	At1g69770	CMT3 (chromomethylase 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os03g0302900	AK069222.1	-	Hypothetical protein	2e+0	At5g59750	riboflavin biosynthesis protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os07g0659500	BX898151	-	Non-SMC condensin subunit, XCAP-D2/Cnd1 familyprotein	7e-25	At3g57060	binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.5	99.7	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
24.4	99.4	GSM409434	9311_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
22.0	99.3	GSM409429	Nipponbare_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
19.7	99.1	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
19.3	99.0	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.8	98.4	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.2	98.3	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.5	98.2	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.8	98.0	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.7	98.0	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	7e-34	147	Os09g0466100	AK063940.1	-	Cyclin, N-terminal domain containing protein	2e-1	At5g37550	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-3	46	Os01g0266600	AK058396.1	-	Alkyl hydroperoxide reductase/ Thiol specificantioxidant/ Mal allergen domain containing protein	1e-13	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-3	46	Os11g0568600	AK119932.1	-	THUMP domain containing protein	7e-1	At5g12410	THUMP domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-3	44	Os01g0146550	9629.m00458	-	-	1e-1	At5g13400	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-4	50	Os01g0603700	AK065432.1	-	Conserved hypothetical protein	5e-1	At2g43745	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-3	46	Os03g0860900	AK111575.1	-	Lissencephaly type-1-like homology motif domaincontaining protein	4e-1	At2g32700	WD-40 repeat family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	36	Arabidopsis thaliana	At1g66940	843012	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.C46000035_s_at	PsAffx.C46000035	-	-	4e+0	At5g30341	unknown protein	C.G.	S.X.	Please select
0.02	5e-4	46	Hordeum vulgare	Contig15085_at	Contig15085	-	-	6e+0	At5g18540	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	Populus trichocarpa	PtpAffx.5046.1.A1_at	CV263826	-	-	1e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-8	61	Triticum aestivum	TaAffx.93173.1.S1_at	BJ226453	-	-	1e+0	At2g35260	unknown protein	C.G.	S.X.	Please select
0.03	5e-3	42	Vitis vinifera	1615782_at	CA813676	-	-	2e+0	At5g37770	TCH2 (TOUCH 2)	C.G.	S.X.	Please select
0.26	4e-32	139	Zea mays	Zm.10262.1.S1_at	AF351191.1	-	-	8e-1	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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