CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0478100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os08g0478100 AK063259.1 - Protein of unknown function UPF0029 family protein 2e-4 At4g38090 unknown protein S.X. H.G.
0.44 58.1 Os12g0193100 AK068584.1 - Subtilisin inhibitor I (ASI-I) [Contains:Subtilisin inhibitor II (ASI-II)] 6e-1 At3g61840 unknown protein S.X. H.G.
0.44 58.1 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase S.X. H.G.
0.40 51.1 Os01g0704200 9629.m04922 - Conserved hypothetical protein 9e-12 At5g63040 unknown protein S.X. H.G.
0.39 48.3 Os09g0248000 AK120327.1 - Conserved hypothetical protein 1e-7 At2g03800 GEK1 (GEKO1) S.X. H.G.
0.35 41.7 Os12g0103000 AK068622.1 - Mitochondrial substrate carrier family protein 3e-16 At2g35800 mitochondrial substrate carrier family protein S.X. H.G.
0.27 27.5 Os01g0796500 CA766130 - HAD-superfamily, subfamily IIIA phosphatase domaincontaining protein 8e-1 At3g22090 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.4 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.2 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.4 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.2 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.9 97.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.7 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 40 Os01g0163800 NM_184495.1 - - 4e+0 At5g11550 binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 48 Arabidopsis thaliana At4g38090 829965 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFP - - - C.G. S.X.
0.03 8e-1 36 Glycine max HgAffx.3667.1.A1_at CK349023 - - 8e-1 At5g01230 FtsJ-like methyltransferase family protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HVSMEa0015E13r2_s_at HVSMEa0015E13r2 - - 3e+0 At2g10550 - C.G. S.X.
0.16 4e-12 73 Populus trichocarpa PtpAffx.207424.1.S1_at pmrna14733 hypothetical protein - 3e-23 At4g38090 unknown protein C.G. S.X.
0.52 8e-133 474 Triticum aestivum TaAffx.83169.1.S1_at CD872467 - - 4e-1 At4g38090 unknown protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1617035_s_at CF205538.1 hypothetical protein LOC100260266 - 1e-10 At2g47180 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) C.G. S.X.
0.10 2e-17 89 Zea mays Zm.6754.1.A1_at AI396158 hypothetical protein LOC100279965 - 4e-2 At4g36530 hydrolase, alpha/beta fold family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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