Gene omics information

Query gene ID	Os08g0474700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os08g0474700	AK064878.1	-	-	1e-13	At2g21630	transport protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os04g0440100	AK105415.1	-	Nonsense-mediated decay UPF3 domain containingprotein	2e-9	At1g33980	Smg-4/UPF3 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os06g0208300	AK059092.1	-	Translation protein SH3-like domain containingprotein	2e-8	At2g34210	structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os07g0495900	AK060293.1	-	Regulator of nonsense transcripts 1 homolog	1e-6	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os06g0644500	AK101292.1	-	-	1e-28	At5g20350	TIP1 (TIP GROWTH DEFECTIVE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os03g0223700	AK068416.1	-	ARM repeat fold domain containing protein	2e-49	At2g01690	binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	98.1	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
4.3	96.1	GSM159185	Y Leaf, biological rep 3	GSE6893	Expression data for reproductive development in rice
4.2	96.0	GSM154948	Leaf_tZ-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
3.6	95.5	GSM357122	14-day-old seedling, rep 1	GSE14275	Expression data for heat shock in rice seedlings
3.5	95.3	GSM357134	14-day-old seedling, rep 3	GSE14275	Expression data for heat shock in rice seedlings
3.4	95.2	GSM154956	Leaf_tZ-treatment_120min_replicate 3	GSE6719	Cytokinin responsive genes in rice
3.3	95.1	GSM159183	Y Leaf, biological rep 1	GSE6893	Expression data for reproductive development in rice
3.3	95.1	GSM154954	Leaf_tZ-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice
3.2	94.9	GSM154955	Leaf_tZ-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
3.2	94.9	GSM154950	Leaf_tZ-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	0	656	Os08g0474600	AK101574.1	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	1e-2	At2g37090	IRX9 (IRREGULAR XYLEM 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	1e-8	63	Os11g0433500	AK067849.1	-	Protein transport protein Sec23A (SEC23-relatedprotein A)	1e-9	At4g14160	transport protein, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e+0	36	Os03g0675700	9631.m04590	-	Conserved hypothetical protein	9e-2	At4g38860	auxin-responsive protein, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-2	42	Os10g0342100	9638.m01657	-	-	1e-3	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os02g0761600	AK120494.1	-	Conserved hypothetical protein	3e-22	At4g33380	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os03g0425900	AK105583.1	-	Zn-finger, C2H2 type domain containing protein	4e-3	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-1	38	Os01g0256600	AK063884.1	-	Ribosomal protein L18P/L5E family protein	9e-5	At5g27820	ribosomal protein L18 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-1	38	Os02g0717300	AK065836.1	-	Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein	1e-1	At1g51770	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os05g0196500	AK121381.1	-	Transcription factor jumonji, JmjN domaincontaining protein	2e-12	At1g08620	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os12g0112000	BU673475	-	Peroxidase (EC 1.11.1.7)	3e-3	At5g58400	peroxidase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-13	79	Arabidopsis thaliana	At2g21630	816701	transport protein, putative	F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	2e-15	85	Glycine max	Gma.8062.2.S1_at	BG652071	-	-	4e-14	At2g21630	transport protein, putative	C.G.	S.X.	Please select
0.58	0	1443	Hordeum vulgare	Contig8476_at	Contig8476	-	-	2e-19	At3g23660	transport protein, putative	C.G.	S.X.	Please select
0.24	4e-20	101	Populus trichocarpa	PtpAffx.202637.1.S1_at	pmrna5273	hypothetical protein	-	2e-33	At2g21630	transport protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	0	1055	Triticum aestivum	Ta.7660.1.S1_at	BU099612	-	-	6e-5	At1g05520	transport protein, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Vitis vinifera	1622026_at	CD720393	-	-	3e-1	At5g54840	SGP1	C.G.	S.X.	Please select
0.38	0	763	Zea mays	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006886	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L	GO:0006888	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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