CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0474000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative S.X. H.G.
0.67 87.2 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 S.X. H.G.
0.60 79.7 Os11g0151400 AK106404.1 - Cytochrome P450 family protein 9e-1 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) S.X. H.G.
0.50 68.0 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein S.X. H.G.
0.46 60.9 Os06g0649000 AK106282.1 - The start codon is not identified. 7e-4 At1g80840 WRKY40 S.X. H.G.
0.25 24.1 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 98.6 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
13.3 98.4 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
12.6 98.4 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.0 98.3 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
12.0 98.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
11.9 98.3 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.0 98.2 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.6 98.1 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.2 98.0 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
10.0 98.0 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-74 280 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative C.G. S.X.
0.18 2e-32 141 Os02g0764700 AK107146.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 3e-5 At1g71130 AP2 domain-containing transcription factor, putative C.G. S.X.
0.12 3e-18 93 Os12g0168100 AK107125.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-5 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.08 3e-19 97 Os05g0437100 9633.m03366 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-6 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.04 1e-18 95 Os08g0537900 AK119425.1 - AP2 domain containing protein RAP2.2 (Fragment) 6e-12 At1g52630 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-4 46 Arabidopsis thaliana At1g22985 838906 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. - - - C.G. S.X.
0.09 3e-5 50 Glycine max GmaAffx.92135.1.S1_s_at CF807860 - - 2e-2 At3g20310 ERF7 (ETHYLINE RESPONSE FACTOR 7) C.G. S.X.
0.21 6e-63 240 Hordeum vulgare Contig2471_at Contig2471 - - 1e-1 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.03 2e-3 44 Populus trichocarpa PtpAffx.831.1.A1_at CN549853 hypothetical protein - 1e-7 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.26 4e-38 159 Triticum aestivum TaAffx.116140.1.S1_at CA728150 - - 3e-1 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.04 6e-3 40 Vitis vinifera 1622386_at BQ794629 hypothetical protein LOC100264172 - 9e-3 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.08 1e-7 56 Zea mays Zm.16376.1.S1_at CF348980 AP2 domain containing protein - 2e-1 At2g45740 PEX11D C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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