CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0466200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os08g0466200 AK119564.1 - K+ potassium transporter family protein 8e-2 At4g13420 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) S.X. H.G.
0.33 38.8 Os11g0708100 AK060544.1 - Laccase (EC 1.10.3.2) (Fragment) 1e-8 At5g01190 LAC10 (laccase 10) S.X. H.G.
0.25 24.1 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 S.X. H.G.
0.17 12.6 Os08g0425700 AK059408.1 - Annexin-like protein 4e-2 At1g09176 unknown protein S.X. H.G.
0.15 10.3 Os01g0620800 AK108846.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 6e-5 At3g21760 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
0.15 10.3 Os08g0203700 AK100532.1 - Protein kinase domain containing protein 2e-3 At1g56120 kinase S.X. H.G.
0.11 6.5 Os02g0529800 9630.m03109 - Cytochrome P450 family protein 3e-3 At2g24180 CYP71B6 (CYTOCHROME P450 71B6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.2 99.7 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
28.1 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.3 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.3 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.3 98.7 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.3 98.7 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.0 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 9e-31 137 Os09g0448200 AK066194.1 - K+ potassium transporter family protein 2e-2 At5g14880 potassium transporter, putative C.G. S.X.
0.13 1e-54 216 Os10g0514400 AK060321.1 - Conserved hypothetical protein 9e+0 At4g19920 disease resistance protein (TIR class), putative C.G. S.X.
0.11 1e-103 379 Os02g0438700 AK062610.1 - Conserved hypothetical protein 4e+0 At4g00330 CRCK2 C.G. S.X.
0.09 4e-104 381 Os06g0518100 AK119810.1 - Conserved hypothetical protein 6e+0 At5g48660 - C.G. S.X.
0.08 1e-91 339 Os11g0220300 AK068820.1 - Hypothetical protein 4e-3 At2g20560 DNAJ heat shock family protein C.G. S.X.
0.06 6e-109 397 Os09g0265800 AK120499.1 - HGWP repeat containing protein 6e-2 At1g71870 MATE efflux family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 40 Arabidopsis thaliana At4g13420 826973 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.CL1801Contig1_s_at PsAffx.CL1801Contig1 - - 9e-2 At1g32690 unknown protein C.G. S.X.
0.02 6e-1 36 Hordeum vulgare Contig22402_at Contig22402 potassium transporter HAK4 - 2e-8 At3g02050 KUP3 (K+ UPTAKE TRANSPORTER 3) C.G. S.X.
0.11 3e-11 71 Populus trichocarpa PtpAffx.208103.1.S1_at pmrna16095 hypothetical protein - 1e-6 At2g40540 KT2 (POTASSIUM TRANSPORTER 2) C.G. S.X.
0.23 8e-67 256 Triticum aestivum TaAffx.111463.1.S1_at CA640082 - - 2e-2 At3g05975 - C.G. S.X.
0.02 4e-1 36 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.01 6e-1 36 Zea mays Zm.17854.1.A1_at CK786902 - - 9e-1 At1g75840 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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