CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0445000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 68.0 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative S.X. H.G.
0.50 68.0 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein S.X. H.G.
0.46 60.9 Os04g0644400 AK061322.1 - Proline-rich-like protein 6e-1 At3g55880 unknown protein S.X. H.G.
0.44 58.1 Os02g0647900 AK060824.1 - Aldehyde dehydrogenase domain containing protein 3e-1 At5g48690 - S.X. H.G.
0.38 46.9 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein S.X. H.G.
0.29 31.1 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.5 98.2 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
10.4 98.1 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
9.1 97.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
8.8 97.8 GSM281586 Rice mutant dst, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
8.8 97.8 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.7 97.6 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.1 97.4 GSM281587 Rice mutant dst, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
7.1 97.4 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.0 97.4 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
6.4 97.2 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-45 184 Os02g0790600 AK064699.1 - Zn-finger, RING domain containing protein 2e-4 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.10 5e-23 111 Os06g0233200 AK108060.1 - RING zinc finger protein-like 6e-5 At5g40250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e-20 103 Os02g0692000 AK070774.1 - - 2e-8 At3g03550 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e-11 73 Os06g0218300 AK108491.1 - Conserved hypothetical protein 9e-4 At3g13227 serine-rich protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Arabidopsis thaliana At5g57750 835883 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.03 6e-3 44 Glycine max GmaAffx.28563.1.S1_at BQ094213 - - 9e-7 At1g22500 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 2e-12 73 Hordeum vulgare AF474072_CDS-4_at AF474072_CDS-4 - - 1e+0 At5g05810 ATL43 C.G. S.X.
0.03 2e-2 42 Populus trichocarpa PtpAffx.94481.1.S1_s_at CN549622 hypothetical protein - 3e-14 At5g40250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 3e-13 77 Triticum aestivum TaAffx.100645.1.S1_at CA689015 - - 3e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e+0 32 Vitis vinifera 1622773_at CF605812 hypothetical protein LOC100253381 - 2e-2 At4g15975 protein binding / zinc ion binding C.G. S.X.
0.24 2e-21 103 Zea mays Zm.4124.1.A1_at AI855023 hypothetical protein LOC100273075 - 3e-1 At2g35710 glycogenin glucosyltransferase (glycogenin)-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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