CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0431900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.53 71.3 Os06g0266000 AK105495.1 - Conserved hypothetical protein 1e+0 At4g24590 unknown protein S.X. H.G.
0.46 60.9 Os07g0620000 NM_189851.1 - - 2e+0 At4g06599 ubiquitin family protein S.X. H.G.
0.45 58.8 Os02g0799200 9630.m05523 - - 1e-1 At5g22545 unknown protein S.X. H.G.
0.44 58.1 Os11g0672600 AK119365.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 6e-3 At1g70830 MLP28 (MLP-LIKE PROTEIN 28) S.X. H.G.
0.44 58.1 Os04g0226700 9632.m01388 - - 1e+0 At5g13510 ribosomal protein L10 family protein S.X. H.G.
0.43 55.4 Os07g0410600 NM_187805.1 - - 1e+0 At2g46400 WRKY46 S.X. H.G.
0.41 52.4 Os07g0585400 NM_187008.1 - - 8e+0 At5g42655 - S.X. H.G.
0.40 51.1 Os12g0205600 9638.m00882 - - 3e+0 At5g37770 TCH2 (TOUCH 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.2 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.7 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.2 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.7 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.3 99.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.6 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 7e-30 131 Os06g0347700 9634.m02365 - - 5e-4 At4g37940 AGL21 C.G. S.X.
0.32 8e-36 151 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.25 5e-31 135 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.23 8e-39 161 Os04g0304400 AK102927.1 - MADS-box protein AGL16-II 6e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.21 1e-30 135 Os02g0731200 AY177702.1 - Transcription factor MADS57 3e-12 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.04 1e-40 167 Os08g0432000 AK066449.1 - Hypothetical protein 2e+0 At2g46780 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-7 56 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.09 2e-1 36 Glycine max GmaAffx.71421.1.S1_at AW706936 - - 4e-21 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.18 3e-4 44 Hordeum vulgare Contig3831_at Contig3831 - - 3e-15 At4g18960 AG (AGAMOUS) C.G. S.X.
0.07 4e-3 42 Populus trichocarpa PtpAffx.205555.1.S1_s_at pmrna10986 MIKC mads-box transcription factor /// hypothetical protein - 2e-11 At5g20240 PI (PISTILLATA) C.G. S.X.
0.24 2e-13 75 Triticum aestivum Ta.27569.1.S1_at CD888059 MADS-box transcription factor TaAGL35 - 8e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) C.G. S.X.
0.11 3e-6 50 Vitis vinifera 1621836_at AF373604.1 MADS-box protein 5 - 2e-9 At4g09960 STK (SEEDSTICK) C.G. S.X.
0.27 1e-34 145 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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