CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0431500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0431500 AK058993.1 - Conserved hypothetical protein 3e-20 At4g16450 unknown protein S.X. H.G.
0.57 77.0 Os03g0390400 AB025187.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) S.X. H.G.
0.53 71.3 Os07g0585800 AK105064.1 - NADH-ubiquinone oxidoreductase 18 kDa subunit (EC1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)(Fragment) 7e-9 At5g67590 FRO1 (FROSTBITE1) S.X. H.G.
0.50 68.0 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative S.X. H.G.
0.40 51.1 Os02g0816800 AK102271.1 - Conserved hypothetical protein 4e-24 At2g20360 binding / catalytic/ coenzyme binding S.X. H.G.
0.37 45.0 Os07g0495200 AK070990.1 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.4 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.1 96.0 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.1 96.0 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.8 95.7 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.7 95.6 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7 95.6 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Os04g0136900 AK067888.1 - Conserved hypothetical protein 3e+0 At2g18140 peroxidase, putative C.G. S.X.
0.02 2e-1 38 Os07g0258000 AK109782.1 - Conserved hypothetical protein 6e-2 At5g22550 unknown protein C.G. S.X.
0.02 7e-1 36 Os04g0337500 AK104524.1 - Aldo/keto reductase family protein 3e-18 At1g60730 aldo/keto reductase family protein C.G. S.X.
0.02 3e+0 34 Os05g0525700 9633.m04205 - Hypothetical protein 2e+0 At2g41120 unknown protein C.G. S.X.
0.02 3e+0 34 Os09g0526600 AK106545.1 - Heat shock factor protein 3 (HSF 3) (Heat shocktranscription factor 3) (HSTF 3) 4e-6 At1g46264 AT-HSFB4 C.G. S.X.
0.01 7e-1 36 Os01g0222700 AK101946.1 - Protein of unknown function DUF1544 domaincontaining protein 9e-8 At1g79740 DNA binding / protein dimerization C.G. S.X.
0.01 3e+0 34 Os02g0186200 9630.m00845 - - 8e-1 At3g20130 CYP705A22 C.G. S.X.
0.01 3e+0 34 Os06g0658900 AU029707 - UbiA prenyltransferase family protein 4e+0 At4g15975 protein binding / zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 3e-20 99 Arabidopsis thaliana At4g16450 827343 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I, membrane;FP - - - C.G. S.X.
0.31 3e-30 133 Glycine max Gma.5059.1.S1_at AW348879 - - 2e-33 At4g16450 unknown protein C.G. S.X.
0.44 1e-134 478 Hordeum vulgare Contig5667_at Contig5667 - - 8e-8 At4g16450 unknown protein C.G. S.X.
0.06 8e-3 42 Populus trichocarpa Ptp.5460.1.S1_at CV248055 hypothetical protein - 3e-32 At4g16450 unknown protein C.G. S.X.
0.43 2e-114 412 Triticum aestivum TaAffx.65378.1.S1_at BJ255013 - - 8e-5 At4g16450 unknown protein C.G. S.X.
0.08 1e-4 46 Vitis vinifera 1609459_at CF372527 hypothetical protein LOC100255436 - 9e-11 At4g16450 unknown protein C.G. S.X.
0.40 1e-109 395 Zea mays Zm.8292.1.S1_at AY106611.1 hypothetical protein LOC100275334 - 6e-15 At4g16450 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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