CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0414200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 93.6 Os08g0414200 AK102789.1 - BRCT domain containing protein 3e-1 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) S.X. H.G.
0.60 79.7 Os08g0163100 AK064406.1 - - 1e-2 At2g27510 ATFD3 (ferredoxin 3) S.X. H.G.
0.46 60.9 Os12g0242900 AK064505.1 - DNA polymerase alpha subunit B family protein 3e-3 At5g54360 zinc finger (C2H2 type) family protein-related S.X. H.G.
0.41 52.4 Os03g0607600 9631.m03952 - Cyclin 9e-3 At5g43080 CYCA3 S.X. H.G.
0.41 52.4 Os07g0681600 AK073504.1 - ATP-dependent DNA helicase RecQ family protein 2e+0 At5g09830 BolA-like family protein S.X. H.G.
0.41 52.4 Os04g0185100 AK119406.1 - Conserved hypothetical protein 3e-1 At1g79070 SNARE-associated protein-related S.X. H.G.
0.40 51.1 Os11g0128400 AK102291.1 - CDC45-like protein family protein 3e-13 At3g25100 CDC45 (cell division cycle 45) S.X. H.G.
0.36 44.0 Os12g0124700 AK073156.1 - CDC45-like protein family protein 9e-11 At3g25100 CDC45 (cell division cycle 45) S.X. H.G.
0.34 40.0 Os01g0176500 AK102552.1 - Conserved hypothetical protein 1e+0 At3g57390 AGL18 S.X. H.G.
0.32 36.3 Os04g0177300 AK102094.1 - SNF2-related domain containing protein 8e-9 At5g43530 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.0 99.8 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
32.7 99.8 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
30.6 99.7 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
24.7 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
18.2 98.9 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
11.5 98.2 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
11.1 98.2 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-144 513 Os12g0250900 AK119963.1 - BRCT domain containing protein 5e-1 At2g11005 glycine-rich protein C.G. S.X.
0.03 6e-10 67 Os01g0124100 AK062394.1 - Proteinase inhibitor I12, Bowman-Birk familyprotein 3e+0 At3g58990 aconitase C-terminal domain-containing protein C.G. S.X.
0.02 9e-9 63 Os02g0720900 AK069691.1 - Peptidase A1, pepsin family protein 1e+0 At5g41460 fringe-related protein C.G. S.X.
0.01 9e-6 54 Os01g0871600 AK103248.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-1 At5g07730 unknown protein C.G. S.X.
0.01 8e-3 44 Os04g0495800 AK060753.1 - Plant regulator RWP-RK domain containing protein 9e-15 At2g17150 RWP-RK domain-containing protein C.G. S.X.
0.01 3e-2 42 Os02g0819700 AK067374.1 - DNL zinc finger domain containing protein 8e-3 At3g54826 - C.G. S.X.
0.01 1e-1 40 Os01g0784200 9629.m05634 - S-locus glycoprotein family protein 2e-15 At1g11410 S-locus protein kinase, putative C.G. S.X.
0.01 1e-1 40 Os02g0815800 AK106810.1 - Nucleic acid-binding OB-fold domain containingprotein 2e-6 At5g38890 exoribonuclease-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Arabidopsis thaliana At4g21860 828274 MSRB2 (methionine sulfoxide reductase B 2) F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMPFAV - - - C.G. S.X.
0.02 9e-2 40 Glycine max HgAffx.12914.2.S1_at CB375068 - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HB22H13r_s_at HB22H13r - - 2e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.01 1e+0 36 Populus trichocarpa PtpAffx.21324.1.A1_at CV263972 hypothetical protein - 1e-4 At4g15975 protein binding / zinc ion binding C.G. S.X.
0.06 3e-13 77 Triticum aestivum Ta.5061.1.A1_at BJ276274 - - 3e-1 At1g07985 Expressed protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1612041_at CB347810 - - 5e-11 At3g60540 sec61beta family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.17268.1.S1_at CK369015 pro-resilin - 3e+0 At5g01970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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