CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0408500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os08g0408500 AK068312.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-1 At1g53170 ERF8 S.X. H.G.
0.31 34.5 Os09g0478600 AK109529.1 - The start codon is not identified. 5e+0 At3g06890 unknown protein S.X. H.G.
0.09 4.9 Os02g0797600 AK120644.1 - Conserved hypothetical protein 8e-5 At2g15270 unknown protein S.X. H.G.
0.07 3.7 Os01g0248400 AK072762.1 - NADP-dependent isocitrate dehydrogenase 2e-38 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) S.X. H.G.
0.06 3.0 Os03g0146000 AK061250.1 - RAB1X 3e-9 At5g03530 RABC2A (RAB GTPASE HOMOLOG C2A) S.X. H.G.
0.05 2.5 Os03g0322800 AK101817.1 - Engulfment and cell motility, ELM domaincontaining protein 1e-2 At1g03620 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.03 1.4 Os02g0730300 AK111629.1 - Potassium transporter 8 (AtPOT8) (AtHAK8) 3e-26 At1g70300 KUP6 S.X. H.G.
0.03 1.4 Os09g0369000 AK070758.1 - AP2 domain transcription factor RAP2.3 (Related toAP2 protein 3) (Cadmium-induced protein AS30) 3e-4 At1g71130 AP2 domain-containing transcription factor, putative S.X. H.G.
0.03 1.4 Os05g0494500 AK071846.1 - Conserved hypothetical protein 1e-14 At2g25520 phosphate translocator-related S.X. H.G.
0.02 1.0 Os06g0247800 AK102187.1 - Dynamin-like protein (Fragment) 2e-30 At1g10290 ADL6 (DYNAMIN-LIKE PROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.0 97.8 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
9.0 97.8 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
8.3 97.7 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
7.8 97.6 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.6 97.5 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
6.8 97.3 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
6.8 97.3 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.2 97.1 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
5.7 96.9 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.6 96.9 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-73 278 Os09g0369000 AK070758.1 - AP2 domain transcription factor RAP2.3 (Related toAP2 protein 3) (Cadmium-induced protein AS30) 3e-4 At1g71130 AP2 domain-containing transcription factor, putative C.G. S.X.
0.13 1e-38 163 Os03g0191900 9631.m00866 - AP2 domain family transcription factor homolog(AP2 domain transcription factor) (ABI4:abscisicacid-insensitive 4 ) (ABI4) 4e-2 At1g71130 AP2 domain-containing transcription factor, putative C.G. S.X.
0.11 6e-31 137 Os02g0752800 AK105877.1 - Dehydration responsive element binding protein 2B(DREB2B protein) 7e-5 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.10 2e-21 105 Os06g0222400 AK063886.1 - Hypothetical protein 2e-3 At5g46780 VQ motif-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Arabidopsis thaliana At1g53170 841751 ERF8 encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. - - - C.G. S.X.
0.09 1e-9 65 Glycine max Gma.16611.1.S1_at AW348526 Dehydration responsive element-binding protein 3 (DREB3) - 6e-11 At1g22190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.24 1e-68 260 Hordeum vulgare Contig4317_at Contig4317 - - 2e-1 At1g36060 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 1e+0 36 Populus trichocarpa PtpAffx.213831.1.S1_at pmrna26990 AP2/ERF domain-containing transcription factor - 5e-13 At1g80580 ethylene-responsive element-binding family protein C.G. S.X.
0.21 1e-61 238 Triticum aestivum Ta.5255.1.S1_at BT008937.1 drought-responsive factor-like transcription factor DRFL1a - 4e-3 At1g22190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 6e-2 38 Vitis vinifera 1611910_s_at AY395745.1 similar to putative ethylene response factor ERF3b - 9e-14 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.29 5e-68 258 Zea mays Zm.10842.1.S1_a_at AF493800.1 DRE binding factor 1 - 1e-4 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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