CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0359200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os08g0359200 AK073298.1 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 6e-11 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) S.X. H.G.
0.36 44.0 Os03g0229600 AK072434.1 - Maf-like protein family protein 9e-11 At5g66550 Maf family protein S.X. H.G.
0.36 44.0 Os04g0637400 AK065360.1 - DNA polymerase A family protein 4e-28 At1g50840 POLGAMMA2 (polymerase gamma 2) S.X. H.G.
0.23 21.2 Os06g0239000 AK071932.1 - Glucose inhibited division protein family protein 3e-3 At2g23310 ATRER1C1 S.X. H.G.
0.19 15.1 Os06g0143000 AB014056.1 - Iron-superoxide dismutase (EC 1.15.1.1) 1e-2 At5g23310 FSD3 (FE SUPEROXIDE DISMUTASE 3) S.X. H.G.
0.08 4.2 Os02g0606000 AK058232.1 - - 3e+0 At2g02515 unknown protein S.X. H.G.
0.06 3.0 Os01g0841200 AK060210.1 - Hypothetical plant protein family protein 9e-20 At2g01480 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.7 98.2 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.7 98.1 GSM302918 leaf_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.2 97.1 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
5.7 96.9 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.6 96.9 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.1 96.6 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.0 96.6 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.0 96.6 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.6 96.3 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 819 Os08g0359100 AK067740.1 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 2e-7 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.37 7e-126 452 Os09g0308900 AK121946.1 - Phosphoesterase, PA-phosphatase related familyprotein 3e-6 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.12 5e-13 77 Os01g0693300 AK101201.1 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 2e-11 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.02 1e-1 40 Os05g0549900 9633.m04439 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 9e-3 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.02 2e-1 38 Os02g0127800 AK073018.1 - Glycoside hydrolase, family 16 domain containingprotein 5e-8 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.02 2e-1 38 Os03g0216000 AK109827.1 - Zn-finger, C2H2 type domain containing protein 6e-2 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.01 1e-1 40 Os09g0502100 9637.m02853 - Hypothetical protein 1e-1 At4g15150 glycine-rich protein C.G. S.X.
0.01 8e-1 36 Os04g0614225 9635.m00976 - - 2e-1 At2g38025 - C.G. S.X.
0.01 8e-1 36 Os07g0199000 9635.m00976 - Conserved hypothetical protein 2e-1 At2g38025 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-11 69 Arabidopsis thaliana At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. - - - C.G. S.X.
0.11 9e-20 99 Glycine max GmaAffx.30344.1.S1_at AW349341 - - 5e-6 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.39 7e-86 317 Hordeum vulgare Contig8594_at Contig8594 - - 2e-17 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.12 3e-16 87 Populus trichocarpa PtpAffx.208919.1.S1_at pmrna17686 hypothetical protein - 8e-3 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.41 4e-89 329 Triticum aestivum Ta.3559.1.S1_at BE213357 - - 3e-9 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1621834_at BQ794561 hypothetical protein LOC100254175 - 2e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.49 0 708 Zea mays Zm.8204.1.A1_at BM073273 hypothetical protein LOC100193193 - 5e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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