CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0357000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os08g0357000 BQ905925 - Conserved hypothetical protein 3e+1 At4g01340 CHP-rich zinc finger protein-related S.X. H.G.
0.73 91.1 Os02g0219900 AK060915.1 - Protein of unknown function DUF588 family protein 1e-1 At4g36020 CSDP1 (cold shock domain protein 1) S.X. H.G.
0.60 79.7 Os06g0270900 AF162665.1 - RF2 (EC 1.2.1.3) (T cytoplasm male sterilityrestorer factor 2) 1e-53 At1g23800 ALDH2B7 S.X. H.G.
0.50 68.0 Os01g0290000 AK066523.1 - Cyprosin precursor (EC 3.4.23.-) (Fragment) 8e-14 At1g11910 aspartyl protease family protein S.X. H.G.
0.35 41.7 Os09g0442300 CB666183 - Oryzain gamma chain precursor (EC 3.4.22.-) 4e-30 At5g60360 AALP (Arabidopsis aleurain-like protease) S.X. H.G.
0.18 13.7 Os03g0107800 AK062666.1 - Hypothetical protein 4e-2 At3g22290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.3 98.3 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.2 98.0 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.8 97.8 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
7.0 97.4 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.0 97.0 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
5.2 96.7 GSM421698 XOO, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.0 96.6 GSM387557 Transgenic line 4, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
4.9 96.5 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.9 96.5 GSM387562 Wild-type, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-6 54 Os01g0702000 AK065414.1 - Conserved hypothetical protein 4e-5 At1g75380 wound-responsive protein-related C.G. S.X.
0.03 7e-5 50 Os01g0203800 AK100265.1 - Plant protein of unknown function DUF641 domaincontaining protein 7e-2 At3g62600 ATERDJ3B C.G. S.X.
0.02 1e-3 46 Os11g0579800 AK121986.1 - Gar1 protein RNA-binding region family protein 2e+0 At3g03920 Gar1 RNA-binding region family protein C.G. S.X.
0.02 1e+1 30 Os06g0270200 9634.m01597 - K+ potassium transporter family protein 2e-5 At5g14880 potassium transporter, putative C.G. S.X.
0.01 4e-3 44 Os03g0372500 AK102996.1 - TA11 protein (Fragment) 2e-9 At2g46920 POL (poltergeist) C.G. S.X.
0.01 3e+0 32 Os01g0617700 AK073890.1 - Hypothetical protein 9e-2 At2g04025 unknown protein C.G. S.X.
0.01 3e+0 32 Os07g0445600 AK074000.1 - Conserved hypothetical protein 3e-2 At4g27430 CIP7 (COP1-INTERACTING PROTEIN 7) C.G. S.X.
0.01 1e+1 30 Os07g0414900 AK068756.1 - Transposable element Ac 4e-1 At4g26370 antitermination NusB domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+1 28 Arabidopsis thaliana At4g01340 828062 CHP-rich zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 6e-1 34 Glycine max Gma.5498.1.S1_s_at BM107913 - - 1e-2 At5g62780 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.08 3e+0 30 Hordeum vulgare HB04L12r_at HB04L12r - - 4e+0 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein C.G. S.X.
0.06 2e+0 32 Populus trichocarpa PtpAffx.223909.1.S1_at pmrna42131 hypothetical protein - 6e-1 At1g76994 unknown protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum Ta.28384.1.S1_at CA735041 - - 1e-2 At5g45810 CIPK19 (CBL-INTERACTING PROTEIN KINASE 19) C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1622496_at CB342794 - - 1e+1 At5g14440 - C.G. S.X.
0.04 3e+0 30 Zea mays Zm.8775.2.A1_at AI065673 - - 9e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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