CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0345400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os08g0345400 AK065348.1 - Conserved hypothetical protein 1e-2 At2g04360 unknown protein S.X. H.G.
0.83 95.8 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein S.X. H.G.
0.77 93.1 Os01g0618400 NM_192814.1 - RNA helicase (Fragment) 2e-20 At5g63630 DEAD box RNA helicase, putative S.X. H.G.
0.67 87.2 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) S.X. H.G.
0.60 79.7 Os03g0656900 AK066416.1 - NusB/RsmB/TIM44 domain containing protein 3e-9 At4g26370 antitermination NusB domain-containing protein S.X. H.G.
0.47 62.3 Os01g0558800 AK068120.1 - Conserved hypothetical protein 8e-1 At5g19300 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.2 99.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
17.2 98.8 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.8 98.6 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.6 98.6 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.6 98.6 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.3 98.6 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
12.6 98.4 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.6 98.1 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
10.4 98.1 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.2 98.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Os03g0122200 AB042934.1 - 50S ribosomal protein L11 3e-2 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) C.G. S.X.
0.02 7e-3 44 Os02g0639900 AK099517.1 - Thioredoxin (TRX) 3e-2 At2g01340 unknown protein C.G. S.X.
0.02 7e-3 44 Os05g0152600 9633.m00527 - - 1e-1 At4g08230 glycine-rich protein C.G. S.X.
0.02 7e-3 44 Os10g0450900 AK064065.1 - Glycine-rich cell wall structural protein 2precursor 2e+0 At3g23140 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 7e-3 44 Os10g0445600 AK120673.1 - Conserved hypothetical protein 3e+0 At4g31740 - C.G. S.X.
0.01 3e-2 42 Os09g0329000 9637.m01333 - BURP domain containing protein 1e+0 At1g70370 BURP domain-containing protein / polygalacturonase, putative C.G. S.X.
0.01 3e-2 42 Os09g0562000 9637.m03313 - - 4e+0 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Arabidopsis thaliana At2g04360 814975 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BPO - - - C.G. S.X.
0.06 7e-2 40 Glycine max GmaAffx.83112.2.S1_at AI495532 - - 8e-8 At2g04360 unknown protein C.G. S.X.
0.40 1e-127 456 Hordeum vulgare Contig18449_at Contig18449 - - 2e+0 At5g37640 UBQ9 C.G. S.X.
0.09 3e-13 77 Populus trichocarpa PtpAffx.43780.1.S1_at CV258607 hypothetical protein - 1e-2 At2g04360 unknown protein C.G. S.X.
0.06 1e-2 42 Triticum aestivum TaAffx.60315.1.S1_at CA630445 - - 1e+0 At5g57180 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) C.G. S.X.
0.03 1e-3 44 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.31 4e-115 414 Zea mays Zm.19138.1.S1_at CO525589 hypothetical protein LOC100277966 - 5e-1 At2g46300 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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