Gene omics information

Query gene ID Os08g0344100
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5978.0Os08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.8395.8Os04g0117600AK111699.1-Dihydrouridine synthase, DuS family protein1e-19At4g38890dihydrouridine synthase family proteinS.X.H.G.
0.7793.1Os05g0181000AK122040.1-Heat shock protein Hsp70 family protein7e-12At1g79930HSP91S.X.H.G.
0.4458.1Os09g0372400AK064341.1-Hypothetical protein2e-1At1g20240-S.X.H.G.
0.3032.7Os02g0606100AU162342-Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein6e-7At1g73180eukaryotic translation initiation factor-relatedS.X.H.G.
0.2931.1Os05g0566900AK102711.1-TA9 protein (Fragment)4e-5At1g29370kinase-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.897.6GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.197.4GSM275414Azucena root tip_Before the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.997.3GSM275416Azucena root tip_Before the wax layer_Rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.897.3GSM275408Bala root tip_At the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.597.2GSM4094309311_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.796.9GSM4094329311_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.496.8GSM409427Nipponbare_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.296.7GSM4094339311_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.196.6GSM275410Bala root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.096.6GSM275407Azucena root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.231e-78295Os06g0583400AF513382.1-Histone deacetylase HDAC16e-61At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.231e-60236Os02g0214900AF513383.1-Histone deacetylase clr6 (Cryptic loci regulator6)8e-29At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.231e-60236Os02g0215200AF513383.1-Histone deacetylase (Fragment)8e-29At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.212e-1481Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.355e-74280Glycine maxGmaAffx.58612.1.S1_atBM954406--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.236e-56218Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.131e-25119Populus trichocarpaPtpAffx.32882.1.A1_atCK096564histone deacetylase-3e-29At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.500896Triticum aestivumTaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.171e-49196Vitis vinifera1620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.6001515Zea maysZm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016575The modification of histones by removal of acetyl groups.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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