CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0342000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 96.1 Os08g0342000 9636.m02487 - - 6e-1 At5g62770 unknown protein S.X. H.G.
0.78 93.4 Os05g0482200 9633.m03766 - - 3e+0 At5g20010 RAN-1 S.X. H.G.
0.64 83.4 Os06g0526300 9634.m03139 - - 2e+0 At5g45113 mitochondrial transcription termination factor-related / mTERF-related S.X. H.G.
0.61 81.2 Os01g0278700 NM_188114.1 - - 3e+0 At5g45350 proline-rich family protein S.X. H.G.
0.60 79.7 Os05g0204400 9633.m01014 - - 4e+0 At4g30590 plastocyanin-like domain-containing protein S.X. H.G.
0.58 77.0 Os01g0854200 NM_190657.1 - - 5e-1 At1g68140 - S.X. H.G.
0.57 77.0 Os02g0594400 9630.m03657 - - 8e-2 At4g34120 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) S.X. H.G.
0.53 71.3 Os11g0445500 9639.m02311 - - 9e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
0.51 68.7 Os07g0509400 9635.m03198 - - 6e+0 At3g48209 - S.X. H.G.
0.51 68.7 Os10g0131800 NM_194728.1 - Conserved hypothetical protein 2e+0 At3g53370 DNA-binding S1FA family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.9 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.6 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.6 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Os06g0535601 9634.m03251 - - 4e+0 At5g61228 CPuORF15 (Conserved peptide upstream open reading frame 15) C.G. S.X.
0.04 8e-2 38 Os07g0114500 AK064629.1 - Conserved hypothetical protein 2e+0 At5g02520 - C.G. S.X.
0.03 2e-2 40 Os04g0152600 9632.m00599 - - 2e+0 At3g03670 peroxidase, putative C.G. S.X.
0.02 2e-2 40 Os10g0329700 BM038198 - Serine/threonine protein kinase family protein 3e-1 At1g29720 protein kinase family protein C.G. S.X.
0.02 8e-2 38 Os12g0583500 AK063508.1 - NPH3 domain containing protein 2e-2 At1g70100 unknown protein C.G. S.X.
0.01 8e-2 38 Os11g0475000 AK120736.1 - Hypothetical protein 5e-1 At3g08780 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 34 Arabidopsis thaliana At5g62770 836398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF - - - C.G. S.X.
0.05 9e-1 34 Glycine max Gma.12836.1.A1_at CD392001 - - 3e-3 At3g44735 PSK1 C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HM08L19r_at HM08L19r - - 3e-2 At3g09980 unknown protein C.G. S.X.
0.05 9e-1 34 Populus trichocarpa PtpAffx.70037.1.A1_at CV234075 - - 7e-1 At3g30160 unknown protein C.G. S.X.
0.06 7e-4 44 Triticum aestivum TaAffx.111549.1.S1_at CA638084 - - 4e+0 At3g50550 unknown protein C.G. S.X.
0.05 3e+0 30 Vitis vinifera 1618377_at CF414676 - - 5e-2 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.16803.1.A1_at AI739822 60S ribosomal protein L34 - 4e-7 At1g26880 60S ribosomal protein L34 (RPL34A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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