CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0335600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os08g0335600 AK106063.1 - Protein of unknown function DUF568 domaincontaining protein 1e-1 At2g39520 unknown protein S.X. H.G.
0.88 96.8 Os07g0599900 CF291190 - Conserved hypothetical protein 1e-1 At5g09530 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.82 95.0 Os07g0599700 AK065663.1 - Surface protein PspC 6e+0 At5g09480 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.80 94.6 Os08g0478000 AK059493.1 - Conserved hypothetical protein 4e-1 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.78 93.4 Os07g0142300 AK108823.1 - Conserved hypothetical protein 7e+0 At4g30730 unknown protein S.X. H.G.
0.75 91.9 Os07g0599500 AK068696.1 - Conserved hypothetical protein 2e+0 At5g42504 unknown protein S.X. H.G.
0.71 89.6 Os05g0245300 AB091471.1 - Protein of unknown function DUF588 family protein 7e+0 Atcg00790 - S.X. H.G.
0.67 87.2 Os07g0142600 AK062842.1 - Conserved hypothetical protein 1e+0 At2g07363 unknown protein S.X. H.G.
0.60 79.7 Os01g0827300 AK071929.1 - Laccase precursor (EC 1.10.3.2) 7e-5 At2g30210 LAC3 (laccase 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.9 99.8 GSM262002 IAC165, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
25.5 99.5 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
24.1 99.4 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.6 98.9 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.5 98.9 GSM262006 IAC165, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.7 98.6 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.3 98.6 GSM262007 IAC165, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.3 98.2 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.1 98.2 GSM359913 IR63731 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.9 98.1 GSM261998 IAC165, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-3 44 Os03g0194600 AK062839.1 - Protein of unknown function DUF568 domaincontaining protein 6e+0 At5g53030 unknown protein C.G. S.X.
0.04 4e-9 63 Os08g0524200 AK058714.1 - Protein of unknown function DUF568 domaincontaining protein 2e-1 At5g47530 auxin-responsive protein, putative C.G. S.X.
0.03 1e-2 42 Os10g0144700 CA759092 - Cytochrome P450 family protein 8e-1 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.03 6e-2 40 Os04g0535200 AK119767.1 - Peptidase aspartic family protein 1e-2 At4g16563 aspartyl protease family protein C.G. S.X.
0.03 6e-2 40 Os11g0527700 AU097541 - - 2e-2 At3g61260 DNA-binding family protein / remorin family protein C.G. S.X.
0.02 1e-3 46 Os09g0500900 9637.m02845 - Protein of unknown function DUF568 domaincontaining protein 4e-2 At2g05510 glycine-rich protein C.G. S.X.
0.02 6e-2 40 Os02g0661300 AK106503.1 - Conserved hypothetical protein 5e-4 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At2g39520 818537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.03 3e-3 44 Glycine max GmaAffx.92824.1.S1_at CF808549 - - 1e-21 At1g55340 unknown protein C.G. S.X.
0.22 3e-34 145 Hordeum vulgare HVSMEf0011D04r2_at HVSMEf0011D04r2 - - 1e+1 At5g64900 PROPEP1 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.84231.1.A1_at CK094707 - - 3e+0 At4g03160 - C.G. S.X.
0.04 3e-2 40 Triticum aestivum TaAffx.86321.1.S1_at CA611186 - - 3e+0 At5g42300 UBL5 (UBIQUITIN-LIKE PROTEIN 5) C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1615373_at CD801742 - - 4e+0 At5g52980 unknown protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.9061.1.A1_at BM341558 - - 5e+0 At1g50560 CYP705A25 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006584 The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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