CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0325400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.2 Os08g0325400 9636.m02302 - - 2e+0 At3g23460 cyclopropane fatty acid synthase-related S.X. H.G.
0.75 91.9 Os01g0520800 AK102454.1 - Hypothetical protein 8e+0 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) S.X. H.G.
0.65 83.8 Os06g0186000 AK119326.1 - Protein kinase-like domain containing protein 2e-3 At5g49660 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.61 81.2 Os10g0562200 9638.m03760 - Lipase-like protein 8e-1 At1g06800 lipase class 3 family protein S.X. H.G.
0.55 73.7 Os08g0463900 BI806138 - Conserved hypothetical protein 1e+0 At1g80745 unknown protein S.X. H.G.
0.55 73.7 Os04g0638000 9632.m05301 - - 3e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
0.54 71.9 Os05g0193700 9633.m00918 - IQ calmodulin-binding region domain containingprotein 2e-1 At3g60020 ASK5 (ARABIDOPSIS SKP1-LIKE 5) S.X. H.G.
0.53 71.3 Os03g0373100 AK107517.1 - Conserved hypothetical protein 8e-1 At5g26070 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.52 69.6 Os05g0457400 9633.m03551 - Ribosomal protein L40e family protein 9e-34 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) S.X. H.G.
0.51 68.7 Os11g0250600 9639.m01333 - - 6e+0 At5g13510 ribosomal protein L10 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
237.3 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
64.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
11.1 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.9 96.5 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.3 96.1 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.5 95.3 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.2 94.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.7 94.1 GSM159216 Seed (S4, 11 - 20 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-27 123 Os02g0494000 9630.m02786 - TPR-like domain containing protein 2e+0 At5g26673 - C.G. S.X.
0.11 3e-37 157 Os03g0621400 BP184447 - TPR-like domain containing protein 4e-1 At1g71290 F-box family protein-related C.G. S.X.
0.04 2e-1 38 Os02g0493300 AK069981.1 - Ankyrin repeat containing protein 9e-1 At4g38225 unknown protein C.G. S.X.
0.02 3e-3 44 Os02g0492000 AK119566.1 - Ankyrin repeat containing protein 8e-1 At1g27840 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 2e-1 38 Os09g0124800 AK068333.1 - TPR-like domain containing protein 8e-1 At1g32975 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g23460 821927 cyclopropane fatty acid synthase-related F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFM - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.11103.1.S1_at BE823344 - - 5e+0 At2g04925 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HI01P10w_at HI01P10w - - 4e+0 At1g71430 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.212668.1.S1_at pmrna24781 hypothetical protein - 7e-1 At3g24740 - C.G. S.X.
0.19 2e-24 113 Triticum aestivum TaAffx.118832.1.S1_at CA594110 - - 2e+0 At5g13250 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617636_at CF513931 - - 4e+0 At5g46295 unknown protein C.G. S.X.
0.02 4e-2 38 Zea mays Zm.662.1.S1_at AF262623.1 FDR3 - 8e+0 At2g45630 oxidoreductase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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