CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0207500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os08g0207500 AK105258.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 6e-2 At4g19680 IRT2 S.X. H.G.
0.44 58.1 Os10g0554900 AK120846.1 - Protein of unknown function DUF566 family protein 9e-1 At2g44770 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.42 53.9 Os07g0204400 9635.m01011 - Conserved hypothetical protein 2e-1 At2g40530 unknown protein S.X. H.G.
0.38 46.9 Os05g0135500 BX901098 - Haem peroxidase, plant/fungal/bacterial familyprotein 9e-1 At1g29620 unknown protein S.X. H.G.
0.33 38.8 Os01g0649900 AK068077.1 - Lipolytic enzyme, G-D-S-L family protein 5e-5 At1g28600 lipase, putative S.X. H.G.
0.33 38.8 Os09g0422500 AK121170.1 - Cellulose synthase 3e-33 At5g17420 IRX3 (IRREGULAR XYLEM 3) S.X. H.G.
0.12 7.2 Os07g0689600 AB023819.1 - Nicotianamine synthase 9 (EC 2.5.1.43)(S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 9) 8e-1 At2g39250 SNZ (SCHNARCHZAPFEN) S.X. H.G.
0.11 6.5 Os02g0490500 AK071953.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 6e-2 At1g22360 AtUGT85A2 (UDP-glucosyl transferase 85A2) S.X. H.G.
0.09 4.9 Os12g0204500 AK069867.1 - Uncharacterized plant-specific domain 01627containing protein 1e-2 At1g71690 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.7 99.5 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.4 99.4 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
21.2 99.2 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.6 99.1 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.9 98.6 GSM421697 XOO, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.3 98.6 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.5 98.5 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.8 98.1 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.2 98.0 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.0 97.8 GSM421684 XOC, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 4e-32 141 Os04g0613000 AY323915.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 1e-2 At2g32270 ZIP3 C.G. S.X.
0.12 2e-24 115 Os07g0232800 AY324148.1 - Zinc transporter ZIP family protein 1e-5 At4g19680 IRT2 C.G. S.X.
0.06 7e-9 63 Os03g0667300 AB126086.1 - Fe(II) transport protein 1 precursor(Iron-regulated transporter 1) 9e-6 At1g31260 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) C.G. S.X.
0.05 3e-11 71 Os03g0667500 AB070226.1 - Iron-regulated transporter 1 2e-10 At1g31260 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) C.G. S.X.
0.04 2e-6 56 Os05g0198400 AY275180.1 - Zinc transporter 4, chloroplast precursor(ZRT/IRT-like protein 4) 2e-1 At1g10970 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR) C.G. S.X.
0.03 7e-3 44 Os06g0566300 9634.m03522 - Zinc transporter ZIP family protein 3e-1 At1g10970 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-2 40 Arabidopsis thaliana At4g19680 827712 IRT2 encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. - - - C.G. S.X.
0.07 2e-2 42 Glycine max GmaAffx.66101.2.S1_at AW620528 - - 2e-1 At1g47750 PEX11A (PEROXIN 11A) C.G. S.X.
0.20 5e-19 95 Hordeum vulgare Contig26252_at Contig26252 - - 1e+0 At4g19680 IRT2 C.G. S.X.
0.03 3e-7 57 Populus trichocarpa PtpAffx.209197.1.S1_at pmrna18189 ZIP transporter - 5e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.29 5e-30 133 Triticum aestivum TaAffx.106421.1.S1_at CD933478 zinc transporter ZIP - 3e+0 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.04 2e-5 50 Vitis vinifera 1609925_at CF203692.1 - - 2e-2 At2g30080 ZIP6 C.G. S.X.
0.02 6e-3 42 Zea mays Zm.14320.1.S1_at BQ619478 hypothetical protein LOC100277165 - 1e-1 At1g65484 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0010043 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
S GO:0006829 The directed movement of zinc (Zn) ions into, out of, within or between cells.
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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