CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0207000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0207000 AK058705.1 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) S.X. H.G.
0.71 89.6 Os04g0473400 AK067896.1 - 60S ribosomal protein L6 2e-6 At1g74050 60S ribosomal protein L6 (RPL6C) S.X. H.G.
0.67 87.2 Os03g0341100 AK121580.1 - 60S ribosomal protein L18 2e-12 At5g27850 60S ribosomal protein L18 (RPL18C) S.X. H.G.
0.50 68.0 Os03g0851000 AK060496.1 - Transcription factor homolog BTF3-like protein 8e-12 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.50 68.0 Os06g0562600 AK067114.1 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
0.33 38.8 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 97.8 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.5 97.5 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.2 97.4 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.5 97.2 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.5 97.2 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.3 97.2 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.3 97.2 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1 97.1 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.9 97.0 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.6 96.9 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 5e-73 276 Os04g0502300 AK120520.1 - 40S ribosomal protein S11 6e-59 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.01 2e-1 38 Os03g0751100 BU673383 - - 5e-28 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.01 2e-1 38 Os08g0265500 AK100508.1 - AFG1-like ATPase family protein 5e-4 At4g28070 AFG1-like ATPase family protein C.G. S.X.
0.01 2e-1 38 Os09g0420900 AK065475.1 - NPH3 domain containing protein 2e-5 At2g23050 NPY4 (NAKED PINS IN YUC MUTANTS 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 4e-60 232 Arabidopsis thaliana At3g48930 824054 EMB1080 (embryo defective 1080) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFP - - - C.G. S.X.
0.36 8e-19 95 Glycine max GmaAffx.92522.1.S1_at CF808247 Ribosomal protein S11 mRNA, 3' end - 1e-24 At5g23740 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) C.G. S.X.
0.37 4e-58 224 Hordeum vulgare Contig14638_at Contig14638 - - 4e-35 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.38 7e-47 188 Populus trichocarpa Ptp.5621.1.S1_s_at CV231534 hypothetical protein - 2e-89 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.48 1e-94 347 Triticum aestivum TaAffx.112443.2.S1_at CA627380 - - 4e-28 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.36 3e-39 161 Vitis vinifera 1610354_s_at CF511640 hypothetical protein LOC100244095 - 1e-50 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.49 2e-143 508 Zea mays Zm.2157.7.S1_at CF019402 ribosomal protein S11 - 1e-38 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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