CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0199300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os08g0199300 AK062256.1 - GTP-binding protein 2e-26 At1g30580 GTP binding S.X. H.G.
0.77 93.1 Os05g0227700 AK068760.1 - Conserved hypothetical protein 1e-6 At5g25757 unknown protein S.X. H.G.
0.53 71.3 Os07g0180900 AK060711.1 - Ribosomal protein L4/L1e family protein 2e-4 At3g09630 60S ribosomal protein L4/L1 (RPL4A) S.X. H.G.
0.50 68.0 Os03g0296400 AK105818.1 - Eukaryotic translation initiation factor 2 alphasubunit (eIF-2- alpha) 1e-30 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative S.X. H.G.
0.44 58.1 Os05g0368300 BX897790 - Ribosomal protein S4E family protein 5e+0 At5g52120 AtPP2-A14 (Phloem protein 2-A14) S.X. H.G.
0.32 36.3 Os01g0721900 AK121001.1 - Hyaluronan/mRNA binding protein family protein 3e-6 At4g16830 nuclear RNA-binding protein (RGGA) S.X. H.G.
0.29 31.1 Os02g0686400 AK119608.1 - Aspartyl-tRNA synthetase (EC 6.1.1.12)(Aspartate--tRNA ligase) (AspRS) 1e-6 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative S.X. H.G.
0.26 25.6 Os05g0558900 AK101679.1 - Phenylalanyl-tRNA synthetase beta chain (EC6.1.1.20) (Phenylalanine-- tRNA ligase beta chain)(PheRS) (HSPC173) 5e-6 At1g72550 tRNA synthetase beta subunit family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.0 97.0 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3 96.7 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2 96.7 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
5.0 96.6 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0 96.6 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
4.8 96.5 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
4.2 96.0 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Os07g0232800 AY324148.1 - Zinc transporter ZIP family protein 1e-5 At4g19680 IRT2 C.G. S.X.
0.02 4e-1 38 Os06g0538900 AK063825.1 - Protein of unknown function DUF538 family protein 2e+0 At2g27720 60S acidic ribosomal protein P2 (RPP2A) C.G. S.X.
0.01 1e-1 40 Os11g0184900 AB028184.1 - OsNAC5 protein 6e-2 At5g08790 ATAF2 C.G. S.X.
0.01 2e+0 36 Os10g0486100 NM_197082.1 - Cytochrome P450-like protein (CYP86B1) 3e-7 At5g23190 CYP86B1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 2e-26 121 Arabidopsis thaliana At1g30580 839938 GTP binding F:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAP - - - C.G. S.X.
0.35 1e-34 149 Glycine max Gma.2708.1.S1_at AW350781 - - 1e-82 At1g30580 GTP binding C.G. S.X.
0.63 0 1140 Hordeum vulgare Contig3606_at Contig3606 - - 8e-32 At1g30580 GTP binding C.G. S.X.
0.28 2e-27 125 Populus trichocarpa PtpAffx.149380.1.S1_at CX659744 hypothetical protein - 7e-83 At1g30580 GTP binding C.G. S.X.
0.60 0 1106 Triticum aestivum Ta.2982.2.S1_x_at CK206222 - - 8e-29 At1g30580 GTP binding C.G. S.X.
0.26 4e-40 165 Vitis vinifera 1620593_at BQ797219 hypothetical protein LOC100252659 - 1e-97 At1g30580 GTP binding C.G. S.X.
0.65 0 1148 Zea mays Zm.968.1.A1_at CF623311 GTP-binding protein PTD004 - 5e-27 At1g30580 GTP binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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