CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0191700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 83.8 Os08g0191700 AK066092.1 - Glyoxalase I family protein 2e-13 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) S.X. H.G.
0.90 97.1 Os08g0126300 AK105038.1 - Glyceraldehyde-3-phosphate dehydrogenase(Fragment) 6e-23 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) S.X. H.G.
0.89 96.9 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.87 96.6 Os01g0147900 M87064.1 - Triosephosphate isomerase, cytosolic (EC 5.3.1.1)(TIM) (Triose- phosphate isomerase) 1e-23 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) S.X. H.G.
0.85 96.1 Os03g0670700 AK119242.1 - Glycine-rich RNA-binding protein GRP1A 2e-6 At4g39260 GR-RBP8 S.X. H.G.
0.83 95.8 Os02g0161900 AK101547.1 - Ubiquitin 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) S.X. H.G.
0.73 91.1 Os06g0130900 D10965.1 - Histone H3.3 1e-3 At4g40030 histone H3.2 S.X. H.G.
0.68 87.5 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) S.X. H.G.
0.67 87.2 Os06g0681400 U37687.1 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) S.X. H.G.
0.67 87.2 Os05g0489600 D17760.1 - NTGB1 (Fragment) 1e-73 At1g10630 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 95.1 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
2.9 94.5 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
2.8 94.3 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.7 94.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
2.6 93.8 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
2.5 93.6 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
2.5 93.6 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
2.4 93.3 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
2.4 93.3 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.3 93.0 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-5 50 Os02g0280500 AK058486.1 - Glyoxalase I 1e-10 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative C.G. S.X.
0.02 2e-8 61 Os02g0280400 AK111701.1 - Protein kinase-like protein 9e-36 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
0.02 3e-1 38 Os09g0252000 BI801996 - Exonuclease RRP41 1e+0 At3g61620 RRP41 C.G. S.X.
0.01 3e-1 38 Os10g0395700 9638.m02169 - - 5e-2 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-13 77 Arabidopsis thaliana At1g11840 837731 ATGLX1 (GLYOXALASE I HOMOLOG) Encodes a glyoxalase I homolog ATGLX1. - - - C.G. S.X.
0.17 4e-12 73 Glycine max Gma.4424.1.S1_at BG237912 - - 2e-40 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.60 0 809 Hordeum vulgare Contig1934_at Contig1934 - - 7e-13 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.36 3e-31 137 Populus trichocarpa Ptp.4360.1.S1_s_at BU831376 hypothetical protein - 4e-60 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.57 0 741 Triticum aestivum Ta.1842.2.S1_at BJ321503 - - 5e-14 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.36 2e-35 149 Vitis vinifera 1609781_s_at CB341681 hypothetical protein LOC100257313 - 1e-66 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.56 0 690 Zea mays Zm.5962.1.S1_a_at AY241545.1 glyoxalase I - 1e-17 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage