Gene omics information

Query gene ID	Os08g0162600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os08g0162600	AK060121.1	-	Rubredoxin-type Fe(Cys)4 protein family protein	6e-22	At5g17170	ENH1 (enhancer of sos3-1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	Os04g0539000	AK105343.1	-	Conserved hypothetical protein	9e-3	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os08g0553800	AK065711.1	-	Isoflavone reductase family protein	1e-25	At4g35250	vestitone reductase-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os03g0311300	AK073167.1	-	The start codon is not identified.	1e-27	At1g56500	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os12g0420200	CB652532	-	38 kDa ribosome-associated protein	1e+0	At1g31250	proline-rich family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	97.8	GSM174883	A mock 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.5	97.7	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.8	97.6	GSM174884	E mock 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.9	97.3	GSM174890	G mock 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.9	97.3	GSM267999	Green leaves in F9G RILs from parents lines	GSE10872	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
6.6	97.3	GSM421679	XOC, 24 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.1	97.1	GSM174887	D FR13 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.9	97.0	GSM421702	XOO, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.9	97.0	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.7	96.9	GSM421690	XOO, 2 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Os10g0419200	9638.m02395	-	Zn-finger, C2H2 type domain containing protein	1e-5	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os03g0208500	AK065481.1	-	Integral membrane protein	1e-12	At5g67330	ATNRAMP4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os02g0658400	AK120166.1	-	Remorin, C-terminal region domain containingprotein	8e-1	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os02g0658500	AK107591.1	-	Hypothetical protein	5e-1	At5g07670	F-box family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os03g0754200	AK103031.1	-	The start codon is not identified.	1e+0	At5g20110	dynein light chain, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-22	105	Arabidopsis thaliana	At5g17170	831581	ENH1 (enhancer of sos3-1)	F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	9e-22	105	Glycine max	Gma.13129.1.S1_at	CD404336	-	-	2e-62	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.56	1e-129	462	Hordeum vulgare	Contig4014_at	Contig4014	-	-	5e-10	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.20	4e-33	143	Populus trichocarpa	Ptp.7433.1.S1_at	CV267931	-	-	1e-48	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	3e-138	492	Triticum aestivum	Ta.5590.2.S1_at	CK214552	-	-	7e-7	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.11	9e-34	143	Vitis vinifera	1610210_at	CA812095	hypothetical protein LOC100263114	-	8e-28	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.49	2e-84	311	Zea mays	Zm.3400.1.S1_at	CN845120	-	-	2e-9	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
L	GO:0022900	A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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