CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0162400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os08g0162400 AK063453.1 - - 3e-4 At2g23780 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.45 58.8 Os05g0364500 AK103527.1 - Heat shock protein DnaJ family protein 1e-9 At5g49060 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.43 55.4 Os01g0770400 AK061585.1 - Cyclin-like F-box domain containing protein 4e-9 At1g30200 F-box family protein S.X. H.G.
0.41 52.4 Os06g0205000 9634.m01007 - Autophagy 12a (Autophagy APG12) 6e-3 At3g13970 APG12B (AUTOPHAGY 12 B) S.X. H.G.
0.39 48.3 Os02g0150100 AK100093.1 - The start codon is not identified. 6e-15 At5g51280 DEAD-box protein abstrakt, putative S.X. H.G.
0.38 46.9 Os04g0490700 AK072099.1 - Conserved hypothetical protein 5e+0 At4g28485 unknown protein S.X. H.G.
0.37 45.0 Os05g0275700 AK111642.1 - Peroxisome assembly protein 2 (Peroxin-2)(AthPEX2) (Pex2p) 4e-15 At1g79810 TED3 (REVERSAL OF THE DET PHENOTYPE 3) S.X. H.G.
0.36 44.0 Os12g0583000 AK110753.1 - - 4e-11 At2g40190 glycosyl transferase family 1 protein S.X. H.G.
0.35 41.7 Os02g0294700 AK070497.1 - Conserved hypothetical protein 7e-6 At1g79090 unknown protein S.X. H.G.
0.33 38.8 Os09g0514900 AK102371.1 - Protein of unknown function DUF654 family protein 2e-2 At2g46900 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.6 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.5 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.2 97.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-7 57 Os01g0830200 NM_190438.1 - Hypothetical protein 2e+0 At5g41908 unknown protein C.G. S.X.
0.03 1e-4 50 Os03g0678400 AK068558.1 - Zn-finger, RING domain containing protein 1e-3 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 8e-3 44 Os01g0766200 AK070278.1 - The start codon is not identified. 5e-2 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e-4 50 Os12g0636000 AK062128.1 - Zn-finger, RING domain containing protein 4e-2 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-3 46 Os12g0174200 AK063010.1 - Hypothetical protein 1e+0 At5g55570 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-4 48 Arabidopsis thaliana At2g23780 816910 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV - - - C.G. S.X.
0.03 2e-5 52 Glycine max GmaAffx.8182.1.S1_at BE802170 - - 2e-10 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-3 44 Hordeum vulgare Contig6076_at Contig6076 - - 1e-2 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 6e-6 54 Populus trichocarpa Ptp.5173.2.S1_s_at CK112383 - - 3e-2 At4g03510 RMA1 C.G. S.X.
0.08 2e-5 52 Triticum aestivum Ta.27758.1.A1_at CD913153 - - 5e+0 At5g64780 - C.G. S.X.
0.03 7e-2 38 Vitis vinifera 1607904_at CF606914 hypothetical protein LOC100254363 - 1e+0 At4g33690 unknown protein C.G. S.X.
0.08 3e-8 59 Zea mays Zm.18255.1.S1_at CF006723 hypothetical protein LOC100191719 - 3e-1 At3g07650 COL9 (CONSTANS-LIKE 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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