CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0154700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative S.X. H.G.
0.43 55.4 Os06g0150100 AK068890.1 - Conserved hypothetical protein 6e-1 At4g04780 MED21 (MEDIATOR 21) S.X. H.G.
0.27 27.5 Os03g0699400 AK069110.1 - N-acetyltransferase 5 (EC 2.3.1.-) 3e-27 At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.17 12.6 Os03g0364000 AK062527.1 - The start codon is not identified. 2e-6 At5g57860 ubiquitin family protein S.X. H.G.
0.15 10.3 Os02g0177500 AK062715.1 - Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF) 9e-20 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) S.X. H.G.
0.15 10.3 Os12g0540900 AK102417.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS) 3e-19 At3g04600 tRNA synthetase class I (W and Y) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.2 98.8 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
15.7 98.7 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.3 97.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
6.2 97.1 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.5 96.8 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
5.4 96.8 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.9 96.5 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
4.8 96.5 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.4 96.2 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
4.4 96.2 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-6 54 Os02g0255400 NM_196472.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e-3 At2g39480 PGP6 (P-GLYCOPROTEIN 6) C.G. S.X.
0.08 5e-7 56 Os01g0140300 NM_184293.1 - - 6e-1 At3g11110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 3e-5 50 Os04g0412150 9632.m03223 - - 1e+0 At3g56260 unknown protein C.G. S.X.
0.04 8e-9 61 Os06g0141800 AK107277.1 - Conserved hypothetical protein 6e-1 At3g49300 proline-rich family protein C.G. S.X.
0.04 6e-8 59 Os04g0165500 AK105123.1 - Conserved hypothetical protein 4e-1 At1g29850 double-stranded DNA-binding family protein C.G. S.X.
0.04 2e-6 54 Os07g0231900 AK105271.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 2e-1 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) C.G. S.X.
0.03 6e-5 50 Os02g0317400 AK061254.1 - Clathrin adaptor complex, small chain familyprotein 5e-4 At4g08520 clathrin adaptor complex small chain family protein C.G. S.X.
0.03 6e-5 50 Os09g0413000 AK062467.1 - Hypothetical protein 8e-4 At2g02960 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-5 50 Os10g0316400 AK102018.1 - Conserved hypothetical protein 4e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein C.G. S.X.
0.02 4e-3 44 Os11g0271100 AK068981.1 - Protein kinase domain containing protein 5e-86 At5g19010 MPK16 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 9e-24 111 Arabidopsis thaliana At1g03330 839526 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPA - - - C.G. S.X.
0.10 3e-9 63 Glycine max Gma.2161.1.S1_a_at CD404355 - - 3e-20 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.33 2e-88 325 Hordeum vulgare Contig9416_at Contig9416 - - 1e-19 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.12 3e-27 123 Populus trichocarpa PtpAffx.21967.1.A1_at CV236752 hypothetical protein - 1e-44 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.36 3e-82 305 Triticum aestivum TaAffx.113221.1.S1_at CA617162 - - 1e-18 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.21 4e-11 67 Vitis vinifera 1620432_s_at CB974173 hypothetical protein LOC100249484 - 5e-40 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.29 1e-85 315 Zea mays Zm.16342.1.S1_at CO526291 - - 5e-7 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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