CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0137400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os08g0137400 AK066535.1 - Plastocyanin-like domain containing protein 1e-1 At2g20760 protein binding / structural molecule S.X. H.G.
0.50 68.0 Os12g0561900 AK121202.1 - Conserved hypothetical protein 9e-1 At1g02813 unknown protein S.X. H.G.
0.40 51.1 Os12g0458900 AK062722.1 - Hypothetical protein 1e+0 At5g48860 unknown protein S.X. H.G.
0.38 46.9 Os01g0320700 AK063226.1 - Hypothetical protein 1e+0 At5g13340 unknown protein S.X. H.G.
0.31 34.5 Os05g0163300 AK105598.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At1g29420 - S.X. H.G.
0.21 17.9 Os07g0255300 CF325926 - Conserved hypothetical protein 3e+0 At5g60460 sec61beta family protein S.X. H.G.
0.15 10.3 Os02g0816300 AK071879.1 - Mast, C-terminal domain containing protein 1e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) S.X. H.G.
0.13 8.2 Os08g0491600 9636.m03866 - - 1e+0 At4g13800 permease-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.3 99.5 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
24.8 99.5 GSM304390 Stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
20.7 99.2 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
20.4 99.1 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
19.9 99.1 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
15.7 98.7 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
15.1 98.6 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
14.6 98.6 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.2 98.5 GSM304394 Stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
14.0 98.5 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-7 57 Os09g0572700 AK063784.1 - Plastocyanin-like domain containing protein 1e-1 At4g32340 - C.G. S.X.
0.06 6e-8 59 Os04g0545600 AK119259.1 - Uclacyanin 3-like protein 2e+0 At3g03090 AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1) C.G. S.X.
0.05 4e-6 54 Os02g0653200 AK062889.1 - Cupredoxin domain containing protein 7e-3 At1g72230 plastocyanin-like domain-containing protein C.G. S.X.
0.04 2e-5 52 Os06g0218600 AK072802.1 - Plastocyanin-like domain containing protein 8e-6 At1g72230 plastocyanin-like domain-containing protein C.G. S.X.
0.02 2e-5 52 Os06g0218500 AK100667.1 - MCM family protein 1e-56 At2g14050 MCM9 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 Arabidopsis thaliana At2g20760 816605 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane;MBOPF - - - C.G. S.X.
0.03 2e-1 38 Glycine max PsAffx.C48000026_at PsAffx.C48000026 - - 2e-2 At1g03700 - C.G. S.X.
0.09 2e-7 56 Hordeum vulgare Contig12685_at Contig12685 - - 6e+0 At4g29160 SNF7.1 C.G. S.X.
0.04 4e-2 40 Populus trichocarpa PtpAffx.65086.1.A1_at CK095189 - - 7e-1 At2g10560 unknown protein C.G. S.X.
0.33 1e-75 284 Triticum aestivum Ta.3857.1.A1_at CA698230 - - 6e+0 At1g50290 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619255_at CB341953 - - 1e+1 At5g46780 VQ motif-containing protein C.G. S.X.
0.14 2e-10 65 Zea mays Zm.8743.1.A1_at BM347268 blue copper protein - 1e-1 At1g72230 plastocyanin-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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