Gene omics information

Query gene ID	Os08g0129700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	68.0	Os08g0129700	AB099292.1	-	NAD-dependent epimerase/dehydratase family protein	7e-14	At1g30620	MUR4 (MURUS 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os01g0752200	AK069590.1	-	Enoyl-CoA hydratase/isomerase domain containingprotein	5e-6	At1g06550	enoyl-CoA hydratase/isomerase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0637700	AK073849.1	-	Zinc-containing alcohol dehydrogenase superfamilyprotein	6e-11	At5g24760	alcohol dehydrogenase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os04g0338000	AA754007	-	IN2-2 protein	4e-1	At5g35300	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os06g0175500	AK058599.1	-	Epsin, N-terminal domain containing protein	8e-11	At5g35200	epsin N-terminal homology (ENTH) domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os08g0498100	AB110168.1	-	Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)(Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2)(CCoAOMT-2)	2e+0	At3g54000	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	97.3	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.3	97.2	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.8	97.0	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.1	96.6	GSM421720	MOCK, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.0	96.6	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.6	96.3	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5	96.3	GSM421701	XOO, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5	96.3	GSM421681	XOC, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4	96.2	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.1	96.0	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	1e-35	153	Os04g0618200	AB097461.1	-	NAD-dependent epimerase/dehydratase family protein	2e-32	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	3e-27	125	Os07g0139400	AK065558.1	-	NAD-dependent epimerase/dehydratase family protein	2e-14	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-1	40	Os07g0658000	CR293461	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-1	40	Os10g0501300	AK120203.1	-	TPR-like domain containing protein	4e-3	At2g36470	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os12g0512000	9640.m03186	-	Flavin monoxygenase-like protein floozy	3e-3	At4g28720	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	7e-14	79	Arabidopsis thaliana	At1g30620	839942	MUR4 (MURUS 4)	encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	8e-30	133	Glycine max	Gma.6570.1.S1_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.35	7e-145	513	Hordeum vulgare	Contig9821_at	Contig9821	UDP-D-xylose epimerase 3	-	6e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.33	3e-35	151	Populus trichocarpa	PtpAffx.34704.1.S1_at	CV258561	hypothetical protein	-	7e-59	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	1306	Triticum aestivum	Ta.7657.1.S1_s_at	CK208353	-	-	1e-18	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.29	2e-24	113	Vitis vinifera	1614184_at	CF604220	hypothetical protein LOC100250343	-	1e-47	At4g20460	NAD-dependent epimerase/dehydratase family protein	C.G.	S.X.	Please select
0.20	7e-43	174	Zea mays	Zm.9488.1.A1_at	BM336207	UDP-arabinose 4-epimerase 2	-	4e-14	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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