CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0126700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0126700 AK111805.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 4e-1 At3g52980 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.19 15.1 Os02g0326700 AK064977.1 - Rhomboid-like protein family protein 5e-5 At5g38510 rhomboid family protein S.X. H.G.
0.17 12.6 Os03g0782500 AK105637.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-15 At1g09530 PIF3 (PHYTOCHROME INTERACTING FACTOR 3) S.X. H.G.
0.15 10.3 Os01g0279100 AK059435.1 - Basic leucine zipper transcription factor CAT103(Fragment) 1e-114 At3g56940 CRD1 (COPPER RESPONSE DEFECT 1) S.X. H.G.
0.08 4.2 Os10g0181600 AK059127.1 - SAM (and some other nucleotide) binding motifdomain containing protein 3e+0 At2g24060 translation initiation factor 3 (IF-3) family protein S.X. H.G.
0.08 4.2 Os11g0127800 AK059969.1 - Forkhead-associated domain containing protein 1e-1 At4g38092 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.8 99.5 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
22.8 99.3 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.5 99.1 GSM174884 E mock 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
18.7 99.0 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
18.1 98.9 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.0 98.8 GSM421690 XOO, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.0 98.7 GSM421710 MOCK, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3 98.3 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.7 98.2 GSM421714 MOCK, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.1 98.2 GSM421708 MOCK, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-11 73 Os03g0328900 AK102616.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 4e-7 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.03 5e-8 61 Os07g0682400 AK111556.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 3e-2 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.02 5e-8 61 Os07g0682500 AK109592.1 - Hypothetical protein 6e-3 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 8e-4 48 Os09g0344800 AK067189.1 - Protein of unknown function DUF81 domaincontaining protein 3e-19 At2g25737 unknown protein C.G. S.X.
0.01 3e-3 46 Os11g0115100 AK119692.1 - Lipid transfer protein 2e+0 At4g15460 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Arabidopsis thaliana At3g52980 824464 RNA recognition motif (RRM)-containing protein F:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;PO - - - C.G. S.X.
0.01 1e-1 40 Glycine max GmaAffx.60303.1.S1_at BM886518 - - 7e-11 At1g22985 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 4e-2 40 Hordeum vulgare HVSMEb0002K22r2_at HVSMEb0002K22r2 - - 1e+0 At4g03410 peroxisomal membrane protein-related C.G. S.X.
0.02 1e-1 40 Populus trichocarpa Ptp.6012.2.S1_at CA825311 - - 7e+0 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein C.G. S.X.
0.18 3e-54 214 Triticum aestivum TaAffx.65055.1.S1_at BJ264530 - - 1e+1 At5g22210 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1607323_at CF210439 - - 3e+0 At3g60660 unknown protein C.G. S.X.
0.04 7e-10 65 Zea mays Zm.5945.1.S1_a_at AY108142.1 hypothetical protein LOC100279077 - 1e+0 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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