CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0111300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.4 Os08g0111300 AK110905.1 - Transferase family protein 2e-1 At5g17340 unknown protein S.X. H.G.
0.67 87.2 Os08g0563200 AK110263.1 - Protein of unknown function DUF296 domaincontaining protein 2e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) S.X. H.G.
0.61 81.2 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor S.X. H.G.
0.57 77.0 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) S.X. H.G.
0.57 77.0 Os05g0278500 AK067851.1 - Transferase family protein 2e-1 At1g06980 unknown protein S.X. H.G.
0.55 73.7 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein S.X. H.G.
0.54 71.9 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) S.X. H.G.
0.53 71.3 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein S.X. H.G.
0.52 69.6 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 S.X. H.G.
0.48 63.7 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.1 99.4 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.6 99.3 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.2 99.0 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.2 98.8 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
15.5 98.7 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.1 98.5 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.0 98.5 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.9 98.1 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.7 98.1 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.5 98.1 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 6e-56 220 Os08g0112300 AK070381.1 - Transferase family protein 8e-1 At3g03920 Gar1 RNA-binding region family protein C.G. S.X.
0.29 2e-37 159 Os08g0111800 9636.m00098 - Transferase family protein 2e-1 At4g36500 unknown protein C.G. S.X.
0.24 7e-34 147 Os04g0374400 9632.m02899 - - 7e-1 At5g55570 unknown protein C.G. S.X.
0.09 8e-9 63 Os11g0244100 9639.m01292 - Transferase family protein 1e+1 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.08 2e-12 75 Os07g0142700 9635.m00429 - Transferase family protein 3e+0 At5g35732 unknown protein C.G. S.X.
0.04 5e-7 57 Os06g0103100 AK110874.1 - Conserved hypothetical protein 8e-1 At4g38495 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At5g17340 831600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.02 3e-1 38 Glycine max PsAffx.CL1576Contig1_at PsAffx.CL1576Contig1 - - 1e+0 At3g53990 universal stress protein (USP) family protein C.G. S.X.
0.05 5e-13 75 Hordeum vulgare HD13A06r_at HD13A06r - - 4e+0 At3g43430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.608.4.S1_a_at CA825625 hypothetical protein - 3e-1 At2g39980 transferase family protein C.G. S.X.
0.15 2e-20 101 Triticum aestivum Ta.1856.1.S1_at BE446216 - - 2e-1 At3g50270 transferase family protein C.G. S.X.
0.03 7e-2 38 Vitis vinifera 1611625_at CB975151 hypothetical protein LOC100257936 - 6e-15 At5g01210 transferase family protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.14677.1.S1_at BU050777 - - 5e+0 At3g12650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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