CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0109200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os08g0109200 AK101912.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 6e-11 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.57 77.0 Os06g0221200 AK072559.1 - Annexin p33 7e-4 At2g23320 WRKY15 S.X. H.G.
0.40 51.1 Os02g0244700 AF271995.1 - Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31)(PEPCase 1) (CP21) 5e-53 At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) S.X. H.G.
0.36 44.0 Os04g0434800 AB114855.1 - Stromal ascorbate peroxidase 9e-19 At1g77490 TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE) S.X. H.G.
0.36 44.0 Os06g0142700 AK071423.1 - Cytochrome c oxidase subunit Vb 2e-15 At1g80230 cytochrome c oxidase family protein S.X. H.G.
0.19 15.1 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) S.X. H.G.
0.17 12.6 Os04g0464200 AK103582.1 - Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH) 2e-17 At3g48170 ALDH10A9 S.X. H.G.
0.14 9.3 Os07g0647500 NM_185919.1 - Conserved hypothetical protein 3e+0 At5g07950 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.1 99.1 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
17.3 98.9 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
15.5 98.7 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.3 98.2 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.2 98.0 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.8 98.0 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.5 97.9 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.4 97.9 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.4 97.7 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.8 97.6 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Os06g0665400 9634.m04416 - - 2e-1 At1g75550 glycine-rich protein C.G. S.X.
0.02 1e-1 40 Os01g0166200 AK111019.1 - - 2e+0 At4g16240 unknown protein C.G. S.X.
0.01 4e-4 48 Os02g0150100 AK100093.1 - The start codon is not identified. 6e-15 At5g51280 DEAD-box protein abstrakt, putative C.G. S.X.
0.01 3e-2 42 Os09g0524800 AK105833.1 - Apoptosis regulator Bcl-2 protein, BAG domaincontaining protein 3e-1 At5g40630 ubiquitin family protein C.G. S.X.
0.01 3e-2 42 Os12g0170600 AK067033.1 - Alpha-1,4-fucosyltransferase 5e-2 At1g04778 unknown protein C.G. S.X.
0.01 1e-1 40 Os02g0807000 AK101080.1 - Phosphoenolpyruvate carboxylase kinase 4e-2 At1g08650 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) C.G. S.X.
0.01 1e-1 40 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 6e-11 69 Arabidopsis thaliana At5g63620 836482 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV - - - C.G. S.X.
0.22 6e-15 83 Glycine max GmaAffx.87563.1.S1_at BG881336 - - 1e-41 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.64 0 1180 Hordeum vulgare Contig4476_at Contig4476 - - 7e-26 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.12 3e-13 77 Populus trichocarpa PtpAffx.3718.1.A1_at CX167706 hypothetical protein - 6e-31 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.57 2e-171 603 Triticum aestivum Ta.22645.1.S1_a_at CA665091 - - 6e-14 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1620809_at CF404050 hypothetical protein LOC100252547 - 9e-1 At1g25370 unknown protein C.G. S.X.
0.62 0 636 Zea mays Zm.14094.1.S1_at CO519882 S-glutathione dehydrogenase/class III alcohol dehydrogenase - 3e-3 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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