CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0104700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os08g0104700 AK120989.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 7e-4 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding S.X. H.G.
0.36 44.0 Os04g0615100 CB661558 - Lecithin:cholesterol acyltransferase familyprotein 3e-4 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein S.X. H.G.
0.21 17.9 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.14 9.3 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) S.X. H.G.
0.07 3.7 Os06g0102700 AK071080.1 - Arm repeat-containing protein 1e-6 At3g46510 PUB13 (PLANT U-BOX 13) S.X. H.G.
0.06 3.0 Os03g0318600 AB051294.1 - Transcription factor HBP-1b(c38) 4e-15 At5g06950 AHBP-1B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 98.1 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.7 97.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.0 97.4 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
7.0 97.4 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
6.6 97.3 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
5.3 96.7 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.1 96.6 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.3 96.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.1 96.0 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 9e-79 297 Os04g0691900 AK068257.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 1e-5 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.07 2e-5 54 Os12g0236700 AK121544.1 - Serine hydroxymethyltransferase 7e-2 At1g36370 SHM7 (serine hydroxymethyltransferase 7) C.G. S.X.
0.03 6e-6 56 Os09g0402300 AK063300.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 5e-5 At1g71010 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.02 1e-3 48 Os08g0428900 AK120080.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 2e-10 At1g71010 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.02 6e-3 46 Os03g0399500 9631.m02784 - Chaperonin Cpn60/TCP-1 family protein 1e-17 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding C.G. S.X.
0.02 2e-2 44 Os08g0450800 AK073924.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 9e-24 At3g14270 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-4 48 Arabidopsis thaliana At4g33240 829460 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding F:1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, zinc ion binding, ATP binding;P:phosphatidylinositol metabolic process, cellular protein metabolic process;C:unknown;MOFPABV - - - C.G. S.X.
0.03 1e-6 57 Glycine max Gma.11776.2.S1_a_at AI495030 - - 6e-29 At3g14270 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.24 0 708 Hordeum vulgare Contig19429_at Contig19429 - - 1e-5 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.03 1e-15 87 Populus trichocarpa PtpAffx.31555.1.A1_at CV261544 hypothetical protein - 5e-7 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.14 7e-32 141 Triticum aestivum TaAffx.120280.1.S1_at CA699687 - - 8e+0 At5g47130 Bax inhibitor-1 family / BI-1 family C.G. S.X.
0.04 1e-18 95 Vitis vinifera 1607409_at CF516657 hypothetical protein LOC100242669 - 1e-14 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.16 2e-101 371 Zea mays Zm.3071.1.A1_at AW289147 - - 1e-1 At3g26855 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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