CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0677300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os07g0677300 D16442.1 - Peroxidase 2e-4 At3g50990 electron carrier/ heme binding / peroxidase S.X. H.G.
0.46 60.9 Os07g0287400 AK105204.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 6e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
0.45 58.8 Os02g0312600 AF376055.1 - Small GTP-binding protein (Fragment) 5e-47 At5g45970 ARAC2 (ARABIDOPSIS RAC-LIKE 2) S.X. H.G.
0.44 58.1 Os05g0501300 AK059889.1 - 1,4-benzoquinone reductase 5e-7 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
0.42 53.9 Os01g0168800 C99695 - Alpha/beta hydrolase family protein 2e-1 At1g08770 PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) S.X. H.G.
0.40 51.1 Os05g0550300 AK062463.1 - Nonspecific lipid transfer protein 1e+0 At1g44790 ChaC-like family protein S.X. H.G.
0.39 48.3 Os07g0175600 AK073569.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-2 At3g22600 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.36 44.0 Os03g0135700 AK103779.1 - Transcriptional activator Rb homolog (Fragment) 3e-3 At5g65640 bHLH093 (beta HLH protein 93) S.X. H.G.
0.33 38.8 Os01g0260800 AK071445.1 - Conserved hypothetical protein 4e-1 At2g19270 - S.X. H.G.
0.33 38.8 Os09g0249000 AK072805.1 - - 6e-1 At1g11220 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 98.3 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.6 98.2 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.9 98.0 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
9.0 97.8 GSM302920 root_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
7.5 97.5 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.0 97.4 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.7 97.3 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
6.3 97.2 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.2 97.1 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.2 97.1 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 1162 Os07g0677200 AF014467.1 - Peroxidase 3e-6 At5g05340 peroxidase, putative C.G. S.X.
0.47 3e-112 406 Os07g0677500 AF247700.2 - Peroxidase POC1 2e-4 At5g05340 peroxidase, putative C.G. S.X.
0.46 2e-113 410 Os07g0677100 AF014468.1 - Peroxidase 2e-4 At5g05340 peroxidase, putative C.G. S.X.
0.36 2e-55 218 Os07g0677400 AF014469.1 - Peroxidase 7e-4 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.34 3e-94 347 Os07g0676900 AK072862.1 - Peroxidase (EC 1.11.1.7) 6e-4 At5g05340 peroxidase, putative C.G. S.X.
0.22 1e-16 89 Os03g0339300 AK061545.1 - Peroxidase (EC 1.11.1.7) 5e-1 At1g14550 anionic peroxidase, putative C.G. S.X.
0.13 2e-21 105 Os04g0651000 AK108994.1 - Peroxidase 3e-3 At5g58400 peroxidase, putative C.G. S.X.
0.08 5e-3 42 Os06g0256800 9634.m01451 - Conserved hypothetical protein 4e+0 At4g36660 unknown protein C.G. S.X.
0.06 2e-12 75 Os02g0161800 AK105544.1 - Peroxidase precursor (EC 1.11.1.7) 7e-1 At1g48750 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.05 4e-4 46 Os01g0572900 9629.m03725 - - 1e+0 At2g18620 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-4 48 Arabidopsis thaliana At3g50990 824263 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO - - - C.G. S.X.
0.03 9e-1 36 Glycine max Gma.17816.2.S1_s_at BE020641 - - 2e-10 At1g68850 peroxidase, putative C.G. S.X.
0.53 4e-59 228 Hordeum vulgare Contig2119_at Contig2119 - - 9e-9 At1g44970 peroxidase, putative C.G. S.X.
0.03 6e-5 50 Populus trichocarpa PtpAffx.43993.1.S1_at CV249987 hypothetical protein - 3e-5 At5g40150 peroxidase, putative C.G. S.X.
0.41 4e-70 266 Triticum aestivum Ta.82.1.S1_at BJ254055 peroxidase - 1e-2 At1g44970 peroxidase, putative C.G. S.X.
0.03 1e-8 59 Vitis vinifera 1609321_at CA817974 hypothetical protein LOC100241916 - 7e-7 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.39 4e-56 218 Zea mays Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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