CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0666900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.90 97.1 Os07g0666900 AY324877.1 - Na/H antiporter Nhx1 7e-33 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) S.X. H.G.
0.51 68.7 Os09g0456100 AK072474.1 - Remorin, C-terminal region domain containingprotein 4e-1 At4g24430 lyase S.X. H.G.
0.49 64.4 Os04g0525700 AK105830.1 - Peptidase S10, serine carboxypeptidase familyprotein 2e-1 At5g23210 SCPL34 S.X. H.G.
0.47 62.3 Os01g0631700 AK065494.1 - Ser Thr specific protein kinase-like protein 9e-23 At2g42960 protein kinase family protein S.X. H.G.
0.45 58.8 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.45 58.8 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related S.X. H.G.
0.41 52.4 Os02g0219700 9630.m01160 - CD9/CD37/CD63 antigen family protein 4e-1 At5g60220 TET4 (TETRASPANIN4) S.X. H.G.
0.37 45.0 Os02g0702600 AK102962.1 - Protein of unknown function DUF315 domaincontaining protein 3e-1 At4g30480 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.35 41.7 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.34 40.0 Os05g0220600 AK073669.1 - Rhomboid-like protein family protein 1e-8 At5g25752 RBL11 (RHOMBOID-LIKE PROTEIN 11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.7 98.4 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
11.7 98.2 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
11.2 98.2 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.0 97.8 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.9 97.8 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
8.6 97.8 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
8.5 97.7 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
8.1 97.7 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
7.4 97.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.9 97.3 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 1e-35 153 Os11g0648000 AK066444.1 - Sodium/hydrogen exchanger subfamily protein 3e-13 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.27 6e-38 161 Os05g0148600 AK066168.1 - Na/H antiporter 2e-14 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.01 1e-1 40 Os01g0267300 9629.m01613 - Proteinase inhibitor I4, serpin family protein 6e-1 At3g06780 glycine-rich protein C.G. S.X.
0.01 1e-1 40 Os11g0136100 AK064297.1 - Hypothetical protein 7e-5 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
0.01 1e-1 40 Os12g0133100 AK102718.1 - Major facilitator superfamily protein 3e-1 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 7e-33 143 Arabidopsis thaliana At3g05030 819665 NHX2 (SODIUM HYDROGEN EXCHANGER 2) member of Sodium proton exchanger family - - - C.G. S.X.
0.19 2e-27 125 Glycine max GmaAffx.70783.1.S1_at BQ612167 sodium/proton antiporter - 2e-17 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.17 3e-52 206 Hordeum vulgare Contig17085_at Contig17085 - - 5e-4 At3g06370 NHX4 (SODIUM HYDROGEN EXCHANGER 4) C.G. S.X.
0.30 7e-43 176 Populus trichocarpa PtpAffx.222733.1.S1_s_at pmrna40344 sodium proton exchanger - 5e-67 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.48 0 797 Triticum aestivum Ta.24748.1.S1_at AY040246.2 Na+/H+ antiporter - 4e-44 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.17 5e-28 125 Vitis vinifera 1622021_at CF209010 hypothetical protein LOC100259022 - 3e-61 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.32 2e-56 220 Zea mays Zm.3906.1.A1_at AY110110.1 - - 3e-21 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006814 The directed movement of sodium ions (Na+) into, out of, within or between cells.
L GO:0006885 Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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