CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0664100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os07g0664100 NM_186063.1 - Glucose/ribitol dehydrogenase family protein 1e+0 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) S.X. H.G.
0.61 81.2 Os05g0483600 9631.m02049 - - 2e-6 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative S.X. H.G.
0.60 79.7 Os12g0297250 9640.m01989 - - 9e-1 At5g44574 unknown protein S.X. H.G.
0.47 62.3 Os05g0281700 9633.m01850 - - 2e+0 At4g38390 unknown protein S.X. H.G.
0.46 60.9 Os10g0401100 NM_196385.1 - Endonuclease/exonuclease/phosphatase familyprotein 6e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) S.X. H.G.
0.46 60.9 Os08g0299100 9640.m02491 - - 8e-2 At2g19330 leucine-rich repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.7 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.2 99.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.8 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.1 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.4 99.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-146 519 Os07g0664000 9635.m04718 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At1g14900 HMGA (HIGH MOBILITY GROUP A) C.G. S.X.
0.14 1e-85 319 Os07g0663900 9635.m04717 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At5g44450 methyltransferase C.G. S.X.
0.13 1e-97 359 Os12g0260500 AU184051 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At5g56860 GNC (GATA, nitrate-inducible, carbon metabolism-involved) C.G. S.X.
0.12 4e-67 258 Os07g0663700 AK107619.1 - Short-chain dehydrogenase/reductase SDR familyprotein 3e+0 At3g51680 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At3g51880 824351 HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated. - - - C.G. S.X.
0.03 2e-3 46 Glycine max PsAffx.CL1410Contig1_at PsAffx.CL1410Contig1 - - 8e+0 At5g42785 unknown protein C.G. S.X.
0.10 9e-56 218 Hordeum vulgare Contig4527_x_at Contig4527 - - 9e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.02 5e-1 38 Populus trichocarpa Ptp.6614.1.S1_at DN490337 hypothetical protein - 4e-2 At3g26760 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.13 1e-47 192 Triticum aestivum TaAffx.4927.1.S1_at CA728433 - - 4e+0 At1g69920 ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12) C.G. S.X.
0.02 1e-4 48 Vitis vinifera 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.01 3e-3 44 Zea mays Zm.3454.1.S1_at AW282335 sex determination protein tasselseed-2 - 3e+0 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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