CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0664000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os07g0664000 9635.m04718 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At1g14900 HMGA (HIGH MOBILITY GROUP A) S.X. H.G.
0.59 78.0 Os02g0540000 AK107016.1 - Conserved hypothetical protein 4e+0 At4g11870 unknown protein S.X. H.G.
0.59 78.0 Os03g0702100 AK063307.1 - Conserved hypothetical protein 8e-1 At2g43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
0.58 77.0 Os05g0410100 AK108696.1 - Conserved hypothetical protein 1e+1 At5g14690 unknown protein S.X. H.G.
0.51 68.7 Os04g0454400 9632.m00934 - - 4e-1 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) S.X. H.G.
0.51 68.7 Os05g0448650 9633.m03477 - - 3e-1 At5g63530 ATFP3 S.X. H.G.
0.49 64.4 Os12g0413400 AK062663.1 - Hypothetical protein 2e+0 At3g01530 AtMYB57 (myb domain protein 57) S.X. H.G.
0.48 63.7 Os01g0550050 NM_193393.1 - - 4e-1 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative S.X. H.G.
0.44 58.1 Os02g0784000 AK107441.1 - Conserved hypothetical protein 4e+0 At3g16020 phospholipase C S.X. H.G.
0.44 58.1 Os01g0305701 NM_189299.1 - - 8e-1 At2g34870 MEE26 (maternal effect embryo arrest 26) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.8 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
37.4 99.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.5 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.7 99.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.6 99.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.6 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.7 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 5e-151 535 Os07g0663900 9635.m04717 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At5g44450 methyltransferase C.G. S.X.
0.51 3e-115 416 Os07g0663800 AK061856.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e-1 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.50 2e-168 593 Os12g0260500 AU184051 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At5g56860 GNC (GATA, nitrate-inducible, carbon metabolism-involved) C.G. S.X.
0.14 3e-146 519 Os07g0664100 NM_186063.1 - Glucose/ribitol dehydrogenase family protein 1e+0 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At1g14900 838055 HMGA (HIGH MOBILITY GROUP A) Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. - - - C.G. S.X.
0.05 9e-4 46 Glycine max PsAffx.CL1410Contig1_at PsAffx.CL1410Contig1 - - 8e+0 At5g42785 unknown protein C.G. S.X.
0.31 2e-57 222 Hordeum vulgare Contig4527_x_at Contig4527 - - 9e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.04 2e-1 38 Populus trichocarpa Ptp.6614.1.S1_at DN490337 hypothetical protein - 4e-2 At3g26760 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.27 4e-48 192 Triticum aestivum TaAffx.120891.1.S1_at CN009837 - - 3e+1 At5g40730 AGP24 C.G. S.X.
0.04 8e-7 54 Vitis vinifera 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.07 2e-5 50 Zea mays Zm.386.1.S1_at L20621.1 tassel seed2 - 4e-2 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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