CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0660200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os07g0660200 AK067331.1 - Chromodomain-helicase-DNA-binding protein,CHD-1-related 6e-28 At2g13370 CHR5 (chromatin remodeling 5) S.X. H.G.
0.83 95.8 Os02g0633100 AK120559.1 - Winged helix DNA-binding domain containing protein 7e-1 Atcg00150 - S.X. H.G.
0.73 91.1 Os03g0306200 9631.m01910 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 3e-49 At5g49430 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.67 87.2 Os08g0177300 AK063414.1 - HSA domain containing protein 6e-10 At3g24880 DNA binding S.X. H.G.
0.57 77.0 Os08g0180300 AK100130.1 - SNF2-related domain containing protein 2e-12 At1g50410 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein S.X. H.G.
0.55 73.7 Os05g0593300 AK106591.1 - Conserved hypothetical protein 6e-9 At3g24870 DNA binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.6 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e+0 32 Os08g0493750 9636.m03885 - - 2e+0 At3g29431 unknown protein C.G. S.X.
0.03 6e+0 32 Os06g0348100 9634.m02368 - - 3e-1 At5g37820 NIP4 C.G. S.X.
0.02 3e-3 46 Os07g0497000 AK100332.1 - Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2) 2e-48 At5g44800 CHR4 (CHROMATIN REMODELING 4) C.G. S.X.
0.02 6e+0 32 Os07g0420400 9635.m02274 - - 1e-2 At1g68945 unknown protein C.G. S.X.
0.02 6e+0 32 Os08g0439000 9636.m03415 - Phosphofructokinase family protein 3e-9 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
0.01 5e-3 46 Os01g0881000 9629.m06530 - Type III restriction enzyme, res subunit familyprotein 5e-4 At2g13370 CHR5 (chromatin remodeling 5) C.G. S.X.
0.01 2e-2 44 Os05g0150300 AK100732.1 - Possible global transcription activator SNF2L1 1e-125 At5g18620 CHR17 (CHROMATIN REMODELING FACTOR17) C.G. S.X.
0.01 2e-1 40 Os04g0402100 CB658456 - Calnexin (Fragment) 1e-92 At5g07340 calnexin, putative C.G. S.X.
0.01 2e-1 40 Os09g0347900 AK071224.1 - Nicotinamide mononucleotide adenylyltransferase 1(EC 2.7.7.1) (NMN adenylyltransferase 1) 1e-2 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) C.G. S.X.
0.01 3e-1 40 Os01g0204000 AK101188.1 - Conserved hypothetical protein 3e-1 At1g78650 POLD3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-28 127 Arabidopsis thaliana At2g13370 815823 CHR5 (chromatin remodeling 5) F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVA - - - C.G. S.X.
0.02 1e-1 40 Glycine max HgAffx.2331.1.A1_at CK350497 - - 8e-1 At4g33740 unknown protein C.G. S.X.
0.01 8e-1 36 Hordeum vulgare Contig22556_at Contig22556 - - 2e+0 At2g36060 ubiquitin-conjugating enzyme family protein C.G. S.X.
0.17 3e-33 145 Populus trichocarpa PtpAffx.200726.1.S1_s_at pmrna1398 chromatin remodeling complex subunit - 4e-138 At2g13370 CHR5 (chromatin remodeling 5) C.G. S.X.
0.31 2e-123 444 Triticum aestivum TaAffx.19827.1.S1_at BJ272960 - - 2e+0 At3g49645 unknown protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1615605_at CF512316 hypothetical protein LOC100248610 - 2e-11 At4g38810 calcium-binding EF hand family protein C.G. S.X.
0.14 1e-30 135 Zea mays Zm.15581.1.A1_at CK370423 - - 6e+0 At5g13825 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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