CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0658600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os07g0658600 CK738634 - Radc1 1e-8 At5g07030 aspartic-type endopeptidase S.X. H.G.
0.70 88.4 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.53 71.3 Os01g0914400 AK063138.1 - Conserved hypothetical protein 6e-3 At4g12970 unknown protein S.X. H.G.
0.53 71.3 Os04g0525700 AK105830.1 - Peptidase S10, serine carboxypeptidase familyprotein 2e-1 At5g23210 SCPL34 S.X. H.G.
0.50 68.0 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.48 63.7 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) S.X. H.G.
0.47 62.3 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related S.X. H.G.
0.38 46.9 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.32 36.3 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.26 25.6 Os01g0631700 AK065494.1 - Ser Thr specific protein kinase-like protein 9e-23 At2g42960 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.0 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
15.2 98.7 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
14.4 98.6 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
12.9 98.4 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
12.5 98.3 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
11.5 98.2 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.1 98.2 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
10.2 98.0 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.2 97.9 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
9.1 97.9 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 1e-31 139 Os01g0954900 AK110957.1 - Peptidase A1, pepsin family protein 3e-3 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.16 2e-8 61 Os03g0186900 AK062232.1 - Peptidase A1, pepsin family protein 9e-7 At1g09750 chloroplast nucleoid DNA-binding protein-related C.G. S.X.
0.02 6e-3 44 Os03g0668500 AK064871.1 - Hypothetical protein 5e+0 At5g25160 ZFP3 (ZINC FINGER PROTEIN 3) C.G. S.X.
0.01 1e-3 46 Os10g0492500 AK106383.1 - - 1e-3 At2g01340 unknown protein C.G. S.X.
0.01 6e-3 44 Os01g0795100 9629.m05717 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 8e-5 At1g66220 subtilase family protein C.G. S.X.
0.01 6e-3 44 Os01g0902800 NM_190327.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 8e-1 At5g01180 PTR5 (PEPTIDE TRANSPORTER 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-8 61 Arabidopsis thaliana At5g07030 830594 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFO - - - C.G. S.X.
0.03 1e-6 56 Glycine max Gma.6374.1.S1_s_at CD393091 - - 3e-47 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.48 4e-124 444 Hordeum vulgare Contig13984_at Contig13984 - - 6e-7 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.03 1e+0 36 Populus trichocarpa PtpAffx.221369.1.S1_at pmrna38229 hypothetical protein - 1e+1 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.41 3e-86 319 Triticum aestivum TaAffx.18815.1.S1_at BJ314758 - - 3e-5 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.07 2e-7 56 Vitis vinifera 1606471_at CF372161 hypothetical protein LOC100244589 - 3e-6 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.67 0 850 Zea mays Zm.1133.1.S1_at BM382336 hypothetical protein LOC100191400 - 6e-8 At5g07030 aspartic-type endopeptidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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