CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0657500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os07g0657500 AK058476.1 - - 3e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) S.X. H.G.
0.25 24.1 Os07g0508200 AK069914.1 - Hypothetical protein 2e-1 At1g54215 proline-rich family protein S.X. H.G.
0.18 13.7 Os01g0899000 AK121843.1 - Pti1 kinase-like protein 3e-40 At2g43230 serine/threonine protein kinase, putative S.X. H.G.
0.12 7.2 Os01g0976000 AK067175.1 - The start codon is not identified. 4e-9 At2g28390 SAND family protein S.X. H.G.
0.11 6.5 Os05g0400700 AK072739.1 - DNA-directed RNA polymerase II 19 kDa polypeptide(EC 2.7.7.6) (RNA polymerase II subunit 5) 2e-21 At5g59180 NRPB7 S.X. H.G.
0.09 4.9 Os03g0773100 AK065113.1 - Myb/SANT domain protein 2e-12 At2g36960 TKI1 (TSL-kinase interacting protein 1) S.X. H.G.
0.09 4.9 Os02g0280100 AK060301.1 - Micro-fibrillar-associated 1, C-terminal domaincontaining protein 4e-15 At5g17900 - S.X. H.G.
0.09 4.9 Os08g0439100 AK067282.1 - Protein of unknown function DUF1336 domaincontaining protein 1e-13 At5g35180 phosphoinositide binding S.X. H.G.
0.07 3.7 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein S.X. H.G.
0.05 2.5 Os05g0558800 AK066898.1 - Conserved hypothetical protein 1e-3 At4g28910 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.5 96.8 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
4.7 96.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.6 96.3 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.8 95.7 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.8 95.7 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.6 95.5 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.2 94.9 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 44 Os05g0183400 9633.m00813 - - 2e+0 At2g22470 AGP2 (ARABINOGALACTAN PROTEIN 2) C.G. S.X.
0.01 4e-3 44 Os09g0114500 AK059015.1 - Kinesin-like protein (Fragment) 1e-51 At5g47820 FRA1 (FRAGILE FIBER 1) C.G. S.X.
0.01 4e-3 44 Os11g0565000 9639.m03229 - Leucine-rich repeat, plant specific containingprotein 4e+0 At5g16920 - C.G. S.X.
0.01 2e-2 42 Os03g0588800 9631.m03760 - Hypothetical protein 1e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
0.01 2e-2 42 Os11g0523800 AK071997.1 - Transcriptional factor B3 family protein 3e-18 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At5g64905 836614 PROPEP3 (Elicitor peptide 3 precursor) F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PM - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.68286.1.A1_at BG839255 - - 2e-1 At4g30670 unknown protein C.G. S.X.
0.35 1e-58 226 Hordeum vulgare Contig18350_at Contig18350 - - 7e+0 At4g00140 EDA34 (embryo sac development arrest 34) C.G. S.X.
0.04 5e-2 40 Populus trichocarpa PtpAffx.831.1.A1_at CN549853 hypothetical protein - 1e-7 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.27 2e-50 200 Triticum aestivum TaAffx.66736.1.S1_at BJ259966 - - 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1612008_at CF604996 hypothetical protein LOC100243222 - 1e+0 At4g08790 nitrilase, putative C.G. S.X.
0.02 1e-2 40 Zea mays Zm.2031.2.A1_a_at BM072808 csu1120 protein /// metallothionein-like protein type 2 - 3e-4 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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