CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0654400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0654400 9635.m04629 - BLE2 protein 1e-1 At2g34150 WAVE1 S.X. H.G.
0.50 68.0 Os07g0650600 AK067435.1 - BLE2 protein 4e-1 At2g31335 unknown protein S.X. H.G.
0.46 60.9 Os04g0307500 AK067041.1 - Protein kinase domain containing protein 2e-6 At3g59350 serine/threonine protein kinase, putative S.X. H.G.
0.40 51.1 Os04g0286300 AK067467.1 - Protein kinase domain containing protein 2e-6 At5g18500 protein kinase family protein S.X. H.G.
0.23 21.2 Os01g0974400 AK106014.1 - Zn-finger, RING domain containing protein 8e-1 At2g28840 ankyrin repeat family protein S.X. H.G.
0.22 19.4 Os04g0565400 9632.m04617 - Cis-zeatin O-glucosyltransferase 6e-2 At2g43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.6 99.8 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
15.9 98.7 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
15.7 98.7 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
14.4 98.6 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.7 98.1 GSM421704 XOO, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.3 97.9 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
8.9 97.8 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
8.2 97.7 GSM421725 MOCK, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.8 97.6 GSM421724 MOCK, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 785 Os07g0650600 AK067435.1 - BLE2 protein 4e-1 At2g31335 unknown protein C.G. S.X.
0.45 0 2189 Os07g0654500 AK122088.1 - Conserved hypothetical protein 9e-1 At3g16720 ATL2 C.G. S.X.
0.30 4e-138 494 Os07g0543500 9635.m03554 - Conserved hypothetical protein 2e-2 At5g04220 SYTC C.G. S.X.
0.30 2e-90 335 Os07g0653000 9635.m04618 - BLE2 protein 3e+0 At5g60850 OBP4 C.G. S.X.
0.26 0 1197 Os07g0654300 AK121908.1 - Conserved hypothetical protein 1e+1 At3g15640 cytochrome c oxidase family protein C.G. S.X.
0.18 2e-100 369 Os07g0650200 NM_185956.1 - - 2e-1 At3g02690 integral membrane family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Arabidopsis thaliana At2g34150 817976 WAVE1 Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments. - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.C127000038_at PsAffx.C127000038 - - 1e+1 At4g14819 unknown protein C.G. S.X.
0.06 2e-7 57 Hordeum vulgare HV_CEa0015C01r2_at HV_CEa0015C01r2 - - 3e-1 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.79312.1.S1_at CK097590 - - 1e+0 At3g48880 F-box family protein C.G. S.X.
0.01 2e+0 36 Triticum aestivum Ta.9954.1.A1_at BJ237190 - - 3e+0 At5g07490 unknown protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1619518_at CB982195 hypothetical protein LOC100267790 - 3e-7 At2g45620 nucleotidyltransferase family protein C.G. S.X.
0.01 7e-1 36 Zea mays Zm.1527.2.A1_a_at BM078218 xyloglucan endotransglucosylase/hydrolase protein 23 - 1e+0 At5g51790 basix helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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