CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0646300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os07g0646300 AK066044.1 - Conserved hypothetical protein 9e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) S.X. H.G.
0.83 95.8 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.73 91.1 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
0.63 82.7 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
0.60 79.7 Os12g0620400 AK072503.1 - Methyl-CpG binding domain containing protein 8e-1 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.56 76.3 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
0.47 62.3 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 96.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.7 95.6 GSM195225 Shoot GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.5 95.3 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.4 95.2 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.2 94.9 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.1 94.8 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 2682 Os07g0646600 AK069929.1 - Conserved hypothetical protein 2e-1 At1g52220 - C.G. S.X.
0.53 4e-98 359 Os07g0649600 9635.m04575 - Conserved hypothetical protein 7e-5 At4g39580 kelch repeat-containing F-box family protein C.G. S.X.
0.42 6e-42 173 Os07g0645800 CA759805 - Conserved hypothetical protein 7e-5 At4g39580 kelch repeat-containing F-box family protein C.G. S.X.
0.21 4e-40 167 Os10g0505900 AK062588.1 - Conserved hypothetical protein 2e-1 At4g08670 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.20 0 944 Os07g0646700 NM_185909.1 - - 2e+0 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.10 6e-62 240 Os07g0646400 AK119777.1 - - 3e-1 At1g74730 unknown protein C.G. S.X.
0.10 1e-30 135 Os01g0584500 NM_192518.1 - - 2e+0 At1g52342 unknown protein C.G. S.X.
0.09 3e-16 87 Os09g0385900 AK072555.1 - Conserved hypothetical protein 7e-1 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.08 2e-14 81 Os04g0454600 AK066187.1 - Conserved hypothetical protein 4e-1 At5g19680 leucine-rich repeat family protein C.G. S.X.
0.06 2e-17 91 Os07g0664000 9635.m04718 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At1g14900 HMGA (HIGH MOBILITY GROUP A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 36 Arabidopsis thaliana At3g11630 820335 2-cys peroxiredoxin, chloroplast (BAS1) Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.56213.1.A1_at BU550726 - - 4e+0 At3g11580 DNA-binding protein, putative C.G. S.X.
0.14 2e-9 63 Hordeum vulgare Contig20472_at Contig20472 - - 1e+0 At2g35460 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.01 5e+0 34 Populus trichocarpa PtpAffx.40704.1.S1_at DN487438 - - 2e+1 At5g60553 - C.G. S.X.
0.28 5e-24 113 Triticum aestivum Ta.12501.1.A1_at BQ171162 - - 1e-1 At4g39580 kelch repeat-containing F-box family protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1609869_at CA815742 hypothetical protein LOC100253108 - 5e-6 At1g51560 FMN binding C.G. S.X.
0.02 2e+0 34 Zea mays Zm.1899.1.A1_at BM333426 hypothetical protein LOC100216899 - 2e+0 At1g47270 AtTLP6 (TUBBY LIKE PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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