CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0642000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein S.X. H.G.
0.67 87.2 Os01g0390700 CA761520 - - 5e+0 At2g18890 protein kinase family protein S.X. H.G.
0.50 68.0 Os01g0374400 NM_193862.1 - Conserved hypothetical protein 4e+0 At4g33040 glutaredoxin family protein S.X. H.G.
0.50 68.0 Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative S.X. H.G.
0.50 68.0 Os08g0315200 AK106325.1 - Retrotransposon gag protein family protein 1e+0 At2g27710 60S acidic ribosomal protein P2 (RPP2B) S.X. H.G.
0.38 46.9 Os01g0758800 AU082216 - Conserved hypothetical protein 1e+0 At3g26420 ATRZ-1A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.0 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 688 Os09g0557300 NM_188820.1 - Conserved hypothetical protein 8e-1 At1g28100 unknown protein C.G. S.X.
0.20 2e-13 77 Os09g0558600 AK064751.1 - Conserved hypothetical protein 7e-1 At5g60460 sec61beta family protein C.G. S.X.
0.05 3e-2 40 Os09g0480500 9637.m02705 - - 2e-1 At1g74430 MYB95 (myb domain protein 95) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-4 44 Arabidopsis thaliana At1g18680 838449 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:N-terminal protein myristoylation;C:chloroplast;POB - - - C.G. S.X.
0.04 2e-2 40 Glycine max PsAffx.C22000021_at PsAffx.C22000021 - - 4e+0 At4g05070 unknown protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig11437_s_at Contig11437 - - 7e-2 At3g06780 glycine-rich protein C.G. S.X.
0.05 5e+0 32 Populus trichocarpa PtpAffx.98176.1.S1_at BU889542 SAUR family protein /// SAUR family protein - 2e+0 At4g30390 unknown protein C.G. S.X.
0.06 4e-3 42 Triticum aestivum TaAffx.23015.1.S1_at CA741744 - - 1e+0 At1g63390 flavin-containing monooxygenase-related / FMO-related C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1619140_at CF606031 hypothetical protein LOC100246049 - 4e-4 At2g35270 DNA-binding protein-related C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.999.1.S1_at AI881222 hypothetical protein LOC100279401 - 5e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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