CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0631000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os07g0631000 AK066723.1 - Protein of unknown function DUF298 family protein 3e+0 At3g20170 armadillo/beta-catenin repeat family protein S.X. H.G.
0.80 94.6 Os02g0776700 AK070394.1 - Myb, DNA-binding domain containing protein 1e+0 At1g72650 TRFL6 (TRF-LIKE 6) S.X. H.G.
0.52 69.6 Os11g0241900 AK066870.1 - Protein of unknown function DUF231 domaincontaining protein 1e-6 At5g06230 unknown protein S.X. H.G.
0.45 58.8 Os03g0750800 AK061386.1 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) S.X. H.G.
0.43 55.4 Os05g0270200 AK065530.1 - Galactose-binding like domain containing protein 1e+0 At3g10730 sad1/unc-84-like 2 family protein S.X. H.G.
0.42 53.9 Os03g0786800 AK059186.1 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) S.X. H.G.
0.40 51.1 Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) S.X. H.G.
0.38 46.9 Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein S.X. H.G.
0.38 46.9 Os01g0708000 BX901219 - Linker histone, N-terminal domain containingprotein 7e-1 At2g35260 unknown protein S.X. H.G.
0.35 41.7 Os08g0537800 AK059388.1 - The start codon is not identified. 4e-2 At2g37600 60S ribosomal protein L36 (RPL36A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.7 95.6 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.5 95.3 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.0 94.6 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
3.0 94.6 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
2.9 94.5 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
2.8 94.3 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Os05g0551600 9633.m04457 - Conserved hypothetical protein 2e-3 At2g23320 WRKY15 C.G. S.X.
0.02 3e-1 38 Os02g0477900 9630.m02630 - - 6e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.02 3e-1 38 Os09g0516800 9637.m02942 - Conserved hypothetical protein 2e-1 At4g25315 Expressed protein C.G. S.X.
0.01 9e-2 40 Os05g0276100 AK069092.1 - Na+/H+ exchangeing protein-like 2e-5 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e+0 34 Arabidopsis thaliana At3g20170 821561 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;PMFOBA - - - C.G. S.X.
0.15 1e-6 56 Glycine max GmaAffx.87072.1.S1_at BI784972 - - 2e-9 At3g28970 AAR3 (antiauxin-resistant 3) C.G. S.X.
0.38 3e-94 345 Hordeum vulgare Contig10036_at Contig10036 - - 2e+0 At1g30060 COP1-interacting protein-related C.G. S.X.
0.07 7e-8 59 Populus trichocarpa PtpAffx.71827.1.A1_at CV258472 hypothetical protein - 8e-18 At3g28970 AAR3 (antiauxin-resistant 3) C.G. S.X.
0.38 6e-100 365 Triticum aestivum Ta.4384.1.S1_at BQ170958 - - 3e+0 At1g30060 COP1-interacting protein-related C.G. S.X.
0.08 2e-13 75 Vitis vinifera 1612909_at CF404929 hypothetical protein LOC100264659 - 3e-8 At3g28970 AAR3 (antiauxin-resistant 3) C.G. S.X.
0.32 1e-62 240 Zea mays Zm.2321.6.A1_at AI677502 hypothetical protein LOC100277354 - 3e-3 At3g28970 AAR3 (antiauxin-resistant 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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