CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0613600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein S.X. H.G.
0.67 87.2 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related S.X. H.G.
0.58 77.0 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.55 73.7 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) S.X. H.G.
0.48 63.7 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein S.X. H.G.
0.44 58.1 Os01g0609900 AK121722.1 - PDR-like ABC transporter (PDR4 ABC transporter) 8e-22 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) S.X. H.G.
0.30 32.7 Os01g0755700 AK108853.1 - Zn-finger, RING domain containing protein 2e+0 At5g46730 glycine-rich protein S.X. H.G.
0.29 31.1 Os04g0634500 AK071656.1 - KI domain interacting kinase 1 1e-5 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.4 99.4 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
21.5 99.2 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
19.3 99.0 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
16.5 98.8 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.2 98.3 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.5 98.2 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
11.1 98.2 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
10.6 98.1 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.3 98.1 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.8 98.0 GSM154941 Root_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-4 48 Os10g0537100 9638.m03537 - - 3e-11 At2g36080 DNA-binding protein, putative C.G. S.X.
0.02 6e-4 46 Os02g0198000 AK067695.1 - Galactose oxidase, central domain containingprotein 2e-1 At5g19875 unknown protein C.G. S.X.
0.02 6e-4 46 Os06g0571000 9634.m03565 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g19270 unknown protein C.G. S.X.
0.02 6e-4 46 Os07g0287000 AK108052.1 - Cyclin-like F-box domain containing protein 1e+1 At5g44568 unknown protein C.G. S.X.
0.02 6e-4 46 Os09g0304400 9637.m01072 - Conserved hypothetical protein 7e-1 At4g35390 AGF1 (AT-hook protein of GA feedback 1) C.G. S.X.
0.02 6e-4 46 Os11g0247500 AK110848.1 - Hypothetical protein 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related C.G. S.X.
0.02 6e-4 46 Os12g0573800 AK106961.1 - Hypothetical protein 5e-2 At1g04778 unknown protein C.G. S.X.
0.01 6e-4 46 Os11g0546000 AK103366.1 - RNase L inhibitor-like protein 4e-53 At4g19210 ATRLI2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g19270 827667 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO - - - C.G. S.X.
0.04 3e-2 40 Glycine max PsAffx.CL1640Contig1_at PsAffx.CL1640Contig1 - - 3e+0 At4g27350 unknown protein C.G. S.X.
0.04 4e-2 38 Hordeum vulgare Contig8778_s_at Contig8778 - - 2e-2 At3g10185 - C.G. S.X.
0.04 7e-3 42 Populus trichocarpa PtpAffx.16159.1.S1_at DN496713 - - 4e-3 At2g46505 SDH4 C.G. S.X.
0.04 2e-2 40 Triticum aestivum TaAffx.24991.1.S1_at CA708606 - - 8e-1 At5g39130 germin-like protein, putative C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1622633_at CF201563.1 - - 4e-1 At1g21360 GLTP2 (glycolipid transfer protein 2) C.G. S.X.
0.03 9e-3 40 Zea mays Zm.2647.1.A1_at BG268724 hypothetical protein LOC100192886 - 1e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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