CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0608700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0608700 AK120837.1 - Small nuclear ribonucleoprotein G (snRNP-G) (Smprotein G) (Sm-G) (SmG) 9e-14 At3g11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative S.X. H.G.
0.53 71.3 Os12g0616200 AK059735.1 - HUELLENLOS-like protein 2e-3 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) S.X. H.G.
0.44 58.1 Os08g0177700 AK121665.1 - U6 snRNA-associated Sm-like protein LSm7 8e-5 At2g03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.31 34.5 Os07g0614500 AK061069.1 - Elongation factor 1-beta (EF-1-beta) 6e-26 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative S.X. H.G.
0.17 12.6 Os02g0727500 AK121427.1 - Conserved hypothetical protein 3e-2 At1g16810 unknown protein S.X. H.G.
0.09 4.9 Os05g0346300 AF529175.1 - 40S ribosomal protein S7 1e-11 At1g48830 40S ribosomal protein S7 (RPS7A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.4 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.6 96.3 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.5 96.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.0 95.9 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.8 95.7 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7 95.6 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.6 95.5 GSM159193 Inflorescence (P2, 3 - 5 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM159194 Inflorescence (P2, 3 - 5 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Os01g0170800 AK101200.1 - Protein prenyltransferase domain containingprotein 9e-1 At2g21880 ATRAB7A C.G. S.X.
0.02 2e+0 34 Os08g0253700 9636.m01545 - - 5e-1 At2g20080 unknown protein C.G. S.X.
0.01 6e-1 36 Os04g0300150 9632.m02168 - - 3e+0 At3g49180 RID3 (ROOT INITIATION DEFECTIVE 3) C.G. S.X.
0.01 6e-1 36 Os12g0528300 AK067915.1 - Mu2 adaptin subunit (AP50) of AP2 domaincontaining protein 1e-4 At2g20790 protein binding C.G. S.X.
0.01 2e+0 34 Os09g0401200 AK063980.1 - Tetratricoredoxin 5e-8 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 9e-14 77 Arabidopsis thaliana At3g11500 820323 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA - - - C.G. S.X.
0.23 6e-22 105 Glycine max GmaAffx.91415.1.S1_at CF807140 - - 9e-26 At2g23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) C.G. S.X.
0.34 6e-75 280 Hordeum vulgare Contig2540_at Contig2540 - - 2e-27 At3g11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative C.G. S.X.
0.24 1e-19 97 Populus trichocarpa PtpAffx.14782.1.A1_s_at CV266673 hypothetical protein - 6e-24 At2g23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) C.G. S.X.
0.30 1e-74 280 Triticum aestivum Ta.3625.1.S1_at CA598104 - - 2e-24 At3g11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative C.G. S.X.
0.25 8e-27 119 Vitis vinifera 1607214_at CB347082 hypothetical protein LOC100247783 - 2e-42 At2g23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) C.G. S.X.
0.03 5e-1 34 Zea mays ZmAffx.566.1.A1_at AI714636 - - 2e-1 At5g05610 AL1 (ALFIN-LIKE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage