CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0604600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0604600 AK062832.1 - B12D family protein 2e-2 At1g06475 unknown protein S.X. H.G.
0.83 95.8 Os03g0226200 U76031.1 - Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b) 8e+0 At5g02200 FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) S.X. H.G.
0.77 93.1 Os03g0182800 AY323478.1 - Ethylene responsive element binding factor3(OsERF3) 5e-2 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) S.X. H.G.
0.73 91.1 Os03g0432100 AK065739.1 - Pyruvate, phosphate dikinase, chloroplastprecursor (EC 2.7.9.1) (Pyruvate, orthophosphatedikinase) 5e-59 At4g15530 PPDK (pyruvate orthophosphate dikinase) S.X. H.G.
0.63 82.7 Os01g0185500 NM_189612.1 - RmlC-like cupin family protein 9e-2 At5g39890 unknown protein S.X. H.G.
0.42 53.9 Os03g0233900 U76030.1 - Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a) 2e+0 At1g30260 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.3 99.7 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
27.9 99.6 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
24.6 99.4 GSM359923 Pokkali root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
24.4 99.4 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
22.6 99.3 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
22.4 99.3 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.4 99.3 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.8 99.2 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.5 99.2 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
20.5 99.1 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 46 Os06g0472000 AK063588.1 - Mss4-like domain containing protein 3e-11 At1g53670 MSRB1 (methionine sulfoxide reductase B 1) C.G. S.X.
0.03 6e-4 46 Os09g0342000 AK111440.1 - Cyclin-like F-box domain containing protein 3e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) C.G. S.X.
0.02 6e-4 46 Os02g0643200 AK106784.1 - YABBY protein family protein 2e-13 At4g00180 YAB3 (YABBY3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 40 Arabidopsis thaliana At1g06475 2745744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P - - - C.G. S.X.
0.05 7e-3 42 Glycine max PsAffx.C51000028_at PsAffx.C51000028 - - 1e-2 At1g06475 unknown protein C.G. S.X.
0.35 2e-49 194 Hordeum vulgare Contig6938_at Contig6938 - - 1e+0 At1g45145 ATTRX5 C.G. S.X.
0.12 3e-8 59 Populus trichocarpa PtpAffx.216900.1.S1_s_at pmrna31954 hypothetical protein - 2e+0 At3g29970 germination protein-related C.G. S.X.
0.36 1e-46 186 Triticum aestivum Ta.9401.2.S1_x_at CA639919 - - 4e+0 At1g33040 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) C.G. S.X.
0.04 1e-3 42 Vitis vinifera 1610013_s_at CF213272 hypothetical protein LOC100259835 - 6e-6 At2g26530 AR781 C.G. S.X.
0.35 7e-34 143 Zea mays Zm.18259.1.A1_x_at CN844705 B12D protein - 2e+1 At5g45775 60S ribosomal protein L11 (RPL11D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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