Gene omics information

Query gene ID	Os07g0603000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os07g0603000	9635.m04118	-	-	9e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os10g0187701	9638.m00964	-	-	1e-2	At5g63740	zinc finger protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os09g0566200	9637.m03358	-	-	3e+0	At4g22600	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	Os01g0690600	NM_192136.1	-	Protein kinase family protein	3e-3	At1g66980	protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	Os01g0243000	AK063344.1	-	Esterase/lipase/thioesterase domain containingprotein	7e-1	At5g44710	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.00	0.1	Os08g0231100	AK065349.1	-	Hypothetical protein	3e-1	At3g44110	ATJ3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
149.4	100.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
37.1	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
32.2	99.7	GSM375769	gid2-1_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
19.1	99.0	GSM375777	slr1 (k1001)_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
18.2	98.9	GSM375775	slr1 (k1001)_ shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
15.4	98.7	GSM375770	gid2-1_ shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
15.1	98.6	GSM375773	slr1 (k1001)_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
9.8	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	5e-12	71	Os01g0873000	NM_190814.1	-	Homeodomain-like containing protein	2e+0	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-2	40	Os01g0976800	NM_189506.1	-	Conserved hypothetical protein	2e-4	At3g06740	zinc finger (GATA type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	36	Os11g0140400	9640.m00336	-	Calcium-translocating P-type ATPase, PMCA-typefamily protein	2e-24	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	34	Os06g0283300	9634.m01742	-	Serine/threonine protein kinase family protein	1e-4	At5g15730	serine/threonine protein kinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	34	Os10g0369900	AK069323.1	-	Myo-inositol-1-phosphate synthase	5e-49	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e+0	30	Arabidopsis thaliana	At4g28050	828920	TET7 (TETRASPANIN7)	Member of TETRASPANIN family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-1	34	Glycine max	HgAffx.13348.1.S1_at	CB374634	-	-	3e+0	At5g19750	peroxisomal membrane 22 kDa family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Hordeum vulgare	Contig25371_at	Contig25371	-	-	4e+0	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.07	3e+0	32	Populus trichocarpa	PtpAffx.7093.1.A1_at	CK091450	-	-	1e+0	At4g17600	LIL3:1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e+0	32	Triticum aestivum	Ta.5132.1.S1_at	BJ277319	-	-	7e-2	At3g10405	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1609224_at	CF203372.1	-	-	4e+0	At5g54745	DegP protease family	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.17548.1.A1_at	CD967217	hypothetical protein LOC100272242	-	1e+0	At3g45170	zinc finger (GATA type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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